Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018429.1 Corchorus olitorius cultivar O-4 contig18462, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82864

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2227--2280
4
13.5
4
96
0
99
77
0
22
0
0.76
14911--14963
16
3.2
16
78
19
63
39
1
0
58
1.09
14918--14963
18
2.8
16
81
18
58
39
0
0
60
0.97
16342--17368
518
2.0
517
97
0
1930
32
17
13
36
1.89
19543--19576
15
2.3
15
89
0
50
26
11
0
61
1.30
23790--23826
2
18.5
2
100
0
74
51
0
0
48
1.00
24059--24178
60
2.0
60
91
0
195
32
15
23
29
1.95
39166--39205
18
2.0
20
86
13
57
10
17
17
55
1.69
39313--39339
7
3.9
7
100
0
54
25
0
0
74
0.83
42379--42421
20
2.2
20
91
0
68
6
32
0
60
1.23
44715--44837
61
2.0
61
95
0
219
33
10
22
33
1.89
52511--52553
22
2.0
22
90
0
68
44
9
6
39
1.64
52580--52958
22
17.1
21
69
13
149
36
16
10
36
1.83
52887--53038
80
1.9
81
82
6
193
33
21
7
37
1.81
53050--53091
22
1.9
22
85
9
59
30
14
9
45
1.77
53106--53238
22
6.0
22
72
11
112
39
18
9
33
1.82
53093--53234
44
3.2
44
79
7
155
37
17
9
35
1.82
53401--53438
19
2.0
20
85
15
53
63
2
5
28
1.30
54348--54409
27
2.3
26
81
15
65
43
1
9
45
1.46
55103--55154
2
25.5
2
79
11
52
44
3
3
48
1.39
55104--55139
12
2.9
12
95
4
63
50
2
5
41
1.40
56657--56687
12
2.7
12
95
5
55
64
0
0
35
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58288--58353
30
2.2
30
83
2
80
34
16
12
36
1.86
66071--66140
35
2.0
35
100
0
140
45
0
8
45
1.34
67856--67883
14
2.0
14
100
0
56
35
7
14
42
1.73
69975--70024
20
2.6
19
78
12
57
28
12
6
54
1.60
71294--71343
20
2.5
20
84
15
68
34
0
6
60
1.21
79065--79118
27
2.0
27
85
7
74
25
27
27
18
1.98
79855--79916
30
2.1
30
87
0
88
20
32
19
27
1.97
82516--82559
22
2.0
22
86
8
63
25
31
18
25
1.97

Tables:   1

The End!