Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018432.1 Corchorus olitorius cultivar O-4 contig18465, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2581
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29


Found at i:15 original size:2 final size:2

Alignment explanation


    Indices: 9--52  Score: 88
    Period size: 2  Copynumber: 22.0  Consensus size: 2

          1 TTACTTAC

                                                                          
          9 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

              
         51 TA
          1 TA

         53 CCTTTGAATT


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   42  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:290 original size:6 final size:6

Alignment explanation


    Indices: 281--310  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        271 ATCATTATTT

                                                
        281 AAAAA- AAAAAC AAAAAC AAAAAC AAAAAC A
          1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC A

        311 TATATACCAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   5    5  0.21
   6   19  0.79

ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00


Consensus pattern (6 bp):   
AAAAAC

Done.