Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018435.1 Corchorus olitorius cultivar O-4 contig18468, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51450

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1404--1473
30
2.4
30
82
2
88
15
21
27
35
1.94
3537--3583
23
2.0
23
87
0
67
34
8
17
40
1.79
8772--8833
25
2.6
24
84
5
81
59
4
4
30
1.39
9933--9974
22
1.9
22
85
9
59
33
9
19
38
1.84
14841--14883
11
3.9
11
81
0
50
27
11
20
39
1.88
18395--18428
18
1.9
18
88
5
52
5
8
2
82
0.93
29144--29178
2
18.0
2
94
5
63
48
0
0
51
1.00
30926--30975
25
2.0
25
100
0
100
48
16
20
16
1.82
39515--39544
2
15.0
2
100
0
60
50
0
0
50
1.00
39551--39606
27
2.1
27
83
6
69
28
5
12
53
1.60
39644--39716
34
2.1
34
94
0
128
30
12
19
38
1.88
45187--45288
33
3.1
32
79
10
107
43
15
17
23
1.88
49358--49501
30
4.8
30
95
0
252
31
20
18
29
1.96
49485--49719
28
7.8
28
81
13
254
36
15
15
31
1.90
49456--49750
62
4.7
62
90
6
415
36
15
16
31
1.91

Tables:   1

The End!