Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018437.1 Corchorus olitorius cultivar O-4 contig18470, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35209

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4625--4651
6
4.5
6
100
0
54
18
44
18
18
1.87
10565--10735
86
2.0
86
95
1
308
48
1
9
40
1.46
10752--10790
14
2.9
13
80
3
51
53
2
2
41
1.28
10779--11036
132
2.1
125
86
9
321
50
1
10
37
1.49
11724--11767
19
2.3
20
76
11
56
31
2
0
65
1.05
22620--22876
123
2.0
129
91
7
427
38
10
1
49
1.47
23120--23167
15
3.1
15
81
3
51
43
2
2
52
1.24
25625--25667
4
10.8
4
94
0
68
20
27
0
51
1.48
25665--25701
2
20.0
2
84
15
53
45
0
0
54
1.00
26855--27066
22
9.6
22
74
12
125
33
7
17
41
1.78
26923--27244
22
14.8
22
76
5
242
36
9
18
36
1.83
26925--28056
44
25.8
44
67
12
281
35
9
18
36
1.83
27284--27398
22
5.4
22
69
5
65
34
13
18
33
1.89
27452--27555
22
4.7
22
73
5
77
42
8
13
35
1.75
27478--27556
22
3.6
22
75
1
79
41
7
17
32
1.78
27587--28056
22
21.5
21
68
12
209
35
9
18
36
1.84
27846--27948
46
2.3
44
83
3
125
32
14
16
36
1.89
28073--28139
22
3.1
21
78
16
75
41
5
11
40
1.66
28753--28799
22
2.1
22
92
0
76
17
19
14
48
1.81
30819--30865
20
2.3
21
82
10
53
34
2
38
25
1.68
32313--32355
15
2.9
15
82
0
50
58
6
16
18
1.60
32338--32459
22
6.0
21
76
18
125
54
4
19
20
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32386--32498
7
15.7
7
72
12
77
54
3
22
19
1.59
32396--32472
15
5.7
15
73
20
71
55
3
20
19
1.58
32267--32456
79
2.4
80
85
0
247
53
6
19
20
1.66
32324--32542
94
2.3
99
80
6
261
55
5
19
20
1.62
32427--32578
77
2.0
78
88
6
229
53
4
21
20
1.63
32373--32604
21
11.9
20
69
22
120
52
4
21
21
1.65
32614--32652
9
4.3
9
81
12
53
66
0
17
15
1.25
32639--32715
37
2.1
37
90
0
118
61
2
14
22
1.45
32741--32806
26
2.5
26
82
2
78
56
1
21
21
1.51
34511--34572
31
2.0
31
100
0
124
22
19
16
41
1.89

Tables:   1

The End!