Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018438.1 Corchorus olitorius cultivar O-4 contig18471, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66546

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
472--542
32
2.3
30
88
9
115
11
46
35
7
1.67
478--531
17
3.3
17
74
10
67
11
44
35
9
1.72
4619--4689
32
2.3
30
88
9
115
11
46
35
7
1.67
4625--4678
17
3.3
17
74
10
67
11
44
35
9
1.72
5815--5874
24
2.5
24
94
0
102
31
13
5
50
1.63
6700--6770
22
3.2
22
80
11
65
43
8
19
28
1.80
6712--6797
22
3.8
21
78
9
73
40
9
18
31
1.82
6799--6881
22
3.8
21
75
10
85
38
8
10
42
1.70
6867--6977
54
2.1
54
94
0
195
43
8
7
41
1.62
6867--6992
54
2.4
53
89
5
175
44
7
7
41
1.59
7748--7789
21
2.0
21
86
9
59
16
0
35
47
1.47
7786--7834
25
2.0
25
95
0
89
36
20
30
12
1.89
27464--27490
7
3.9
7
100
0
54
0
25
0
74
0.83
28999--29192
96
2.0
96
100
0
388
38
21
12
27
1.89
29836--29866
15
2.1
15
100
0
62
38
0
35
25
1.56
29848--29894
18
2.5
20
77
22
57
29
2
36
31
1.70
35284--35413
67
1.9
67
95
0
233
17
26
35
20
1.95
35351--35601
76
3.3
76
88
1
371
14
25
37
22
1.93
39087--39138
25
2.1
25
96
0
95
34
34
13
17
1.89
45425--45511
31
2.8
31
98
0
165
20
24
27
27
1.99
51926--51969
21
2.0
22
91
4
72
4
29
36
29
1.77
52027--52068
22
1.9
22
85
0
57
7
30
42
19
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62267--62390
50
2.5
49
84
5
151
55
4
16
23
1.60

Tables:   1

The End!