genome.fa.s18442.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018442.1 Corchorus olitorius cultivar O-4 contig18475, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  178618

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7--38	2	16.0	2	100	0	64	0	50	0	50	1.00
38--62	2	12.5	2	100	0	50	48	0	0	52	1.00
4189--4220	2	16.0	2	100	0	64	50	0	0	50	1.00
6292--6435	72	2.0	72	97	0	270	31	18	19	30	1.95
11565--11628	21	3.2	20	82	8	85	29	20	12	37	1.89
15187--15223	2	18.5	2	100	0	74	51	48	0	0	1.00
19027--19073	24	1.9	24	86	4	67	72	19	4	4	1.18
19038--19077	20	2.0	20	90	0	62	75	20	0	5	0.99
20423--20475	25	2.1	25	86	6	72	41	13	20	24	1.88
21967--22010	13	3.5	13	90	3	63	72	2	0	25	0.96
21969--22010	19	2.2	19	87	8	59	73	2	0	23	0.94
23221--23357	70	2.0	70	89	5	215	38	18	10	32	1.85
23829--23892	27	2.4	28	78	7	78	20	17	29	32	1.95
24487--24524	19	2.1	19	90	5	60	57	7	13	21	1.60
24569--24768	98	2.0	98	84	3	260	42	6	25	26	1.78
24685--24848	83	2.0	83	86	4	233	42	6	22	28	1.77
24599--24946	181	1.9	181	84	3	459	43	6	23	26	1.77
24768--24946	98	1.8	98	81	4	227	44	5	22	27	1.75
42507--42538	9	3.6	9	95	0	55	9	34	43	12	1.75
46997--47034	13	3.1	13	85	11	53	55	0	36	7	1.29
48547--48584	19	2.0	19	89	0	58	55	18	10	15	1.68
53138--53185	24	2.0	24	100	0	96	20	29	29	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57044--57095	2	26.5	2	76	3	52	44	7	0	48	1.31
57311--57391	39	2.0	40	92	2	137	50	8	3	37	1.51
63300--63332	16	2.1	16	100	0	66	39	18	6	36	1.75
66391--66460	36	1.9	36	91	0	113	60	8	10	21	1.55
69323--69360	2	19.0	2	94	0	67	50	2	0	47	1.15
91552--91584	17	1.9	17	93	0	57	24	21	18	36	1.95
105397--105439	21	2.1	21	82	4	52	55	18	11	13	1.68
115378--115409	13	2.5	13	94	0	55	12	50	6	31	1.65
115509--115589	40	2.0	40	85	0	108	29	11	17	41	1.84
115588--115624	13	2.8	13	87	0	56	32	8	43	16	1.77
123324--123420	31	3.1	31	89	0	140	19	24	23	31	1.98
126023--126068	22	2.0	23	84	12	60	28	0	13	58	1.35
140465--140499	17	2.1	17	94	0	61	51	5	8	34	1.56
142332--142373	21	2.0	21	85	0	57	42	21	14	21	1.88
166401--166430	15	2.0	15	93	0	51	20	43	0	36	1.52
167888--167927	21	1.9	21	85	10	55	7	30	7	55	1.56
170535--170574	2	20.5	2	94	5	73	47	0	0	52	1.00
174152--174239	30	3.0	29	83	8	99	43	31	11	13	1.80
175692--175774	43	1.9	43	90	0	130	42	12	4	40	1.63
177060--177406	22	15.9	22	70	12	101	38	10	14	36	1.80
177067--177406	44	7.8	44	70	11	182	39	10	14	36	1.80
177060--177229	66	2.6	65	80	9	184	37	11	15	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177127--177274	66	2.2	66	79	9	167	39	11	12	36	1.80
177170--177363	66	3.0	66	75	6	171	40	9	13	36	1.77
177199--177433	66	3.6	64	77	5	168	40	9	14	34	1.79
177447--177497	13	3.8	13	87	7	75	43	39	0	17	1.49
177448--177497	7	7.3	7	82	13	68	44	40	0	16	1.47
177498--177703	22	9.4	21	72	10	135	33	11	19	35	1.88
177520--177670	44	3.4	44	80	3	171	32	12	18	36	1.88

Tables:   1

The End!