Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018445.1 Corchorus olitorius cultivar O-4 contig18478, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9446
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:11 original size:6 final size:6

Alignment explanation


    Indices: 1--49  Score: 57
    Period size: 6  Copynumber: 8.2  Consensus size: 6

                                                           *         
          1 AAGGAA AAGGAA AAGGAA AAGGAA AA--AA AATGGAAA AAGAAA AAGGAA
          1 AAGGAA AAGGAA AAGGAA AAGGAA AAGGAA AA-GG-AA AAGGAA AAGGAA

             
         49 A
          1 A

         50 TAAGGAATAA


Statistics
Matches: 37,  Mismatches: 2, Indels: 8
        0.79            0.04        0.17

Matches are distributed among these distances:
   4    4  0.11
   6   28  0.76
   7    1  0.03
   8    4  0.11

ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02


Consensus pattern (6 bp):   
AAGGAA

Found at i:3585 original size:2 final size:2

Alignment explanation


    Indices: 3578--3615  Score: 76
    Period size: 2  Copynumber: 19.0  Consensus size: 2

       3568 ATGTATACTC

                                                                    
       3578 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       3616 CAGCTCACTA


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   36  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.