Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018446.1 Corchorus olitorius cultivar O-4 contig18479, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26142

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
137--175
2
19.5
2
100
0
78
48
0
0
51
1.00
6789--7022
103
2.3
103
86
8
316
42
9
8
39
1.68
8551--8586
13
2.8
12
88
12
54
75
0
8
16
1.04
14113--14318
102
2.0
102
97
0
385
21
28
27
22
1.99
16135--16163
12
2.4
12
100
0
58
93
6
0
0
0.36
17553--17651
44
2.3
44
85
1
128
38
7
15
39
1.74
17574--17651
22
3.5
22
94
0
129
38
6
16
38
1.75
25241--25308
22
3.1
22
93
0
118
16
19
32
32
1.93
25672--25730
23
2.6
23
94
0
109
50
10
15
23
1.74

Tables:   1

The End!