Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018449.1 Corchorus olitorius cultivar O-4 contig18482, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57898

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1940--2055
60
1.9
60
91
0
187
30
17
16
36
1.92
1940--2097
60
2.7
58
84
4
183
27
16
17
38
1.91
6900--6959
30
1.9
30
86
6
84
13
20
0
66
1.24
27197--27242
11
4.3
11
76
15
51
39
17
2
41
1.62
27663--27709
22
2.1
22
92
0
76
40
6
2
51
1.39
29729--29761
11
3.0
11
91
8
50
42
0
3
54
1.15
31306--31538
127
1.8
127
91
3
389
27
14
16
40
1.88
31928--31966
20
2.0
20
89
0
60
56
2
0
41
1.13
32262--32308
17
2.7
18
81
12
53
46
0
23
29
1.52
37137--37189
6
8.8
6
80
15
56
77
16
5
0
0.96
37137--37189
11
5.0
11
72
9
56
77
16
5
0
0.96
37162--37188
14
1.9
14
100
0
54
81
14
3
0
0.82
44179--44217
15
2.6
15
79
0
51
76
2
2
17
1.01
48332--48364
16
2.1
16
88
5
50
66
3
0
30
1.06
55168--55227
28
2.1
29
81
9
70
26
16
13
43
1.85
57726--57765
2
19.5
2
89
5
62
47
5
0
47
1.24

Tables:   1

The End!