Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018450.1 Corchorus olitorius cultivar O-4 contig18483, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8538
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35


Found at i:7287 original size:15 final size:15

Alignment explanation


    Indices: 7267--7295  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

       7257 TTGTTGAGCA

                           
       7267 GCTTGGAAGTCAATC
          1 GCTTGGAAGTCAATC

                          
       7282 GCTTGGAAGTCAAT
          1 GCTTGGAAGTCAAT

       7296 GTTCAAATGC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28


Consensus pattern (15 bp):   
GCTTGGAAGTCAATC
Done.