Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018451.1 Corchorus olitorius cultivar O-4 contig18484, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39398

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
753--993
22
10.8
22
74
11
195
34
16
9
39
1.82
755--961
109
1.9
110
82
3
265
34
16
10
38
1.84
934--987
27
2.0
27
92
0
90
33
12
5
48
1.65
847--1058
114
1.9
114
81
9
263
34
17
8
38
1.82
1046--1166
21
5.6
21
78
12
102
46
16
3
33
1.64
1106--1177
25
3.0
25
69
22
82
47
13
0
38
1.44
1084--1177
46
2.0
46
100
0
188
47
14
0
37
1.45
6764--6793
13
2.2
14
94
5
53
16
0
20
63
1.31
9447--9530
42
2.0
42
97
0
159
25
30
13
30
1.93
11279--11303
9
2.8
9
100
0
50
36
0
8
56
1.29
11513--11606
45
2.2
43
90
7
147
38
22
5
34
1.77
12436--12519
3
28.0
3
100
0
168
66
0
0
33
0.92
13315--13523
67
3.1
67
63
28
172
47
8
22
22
1.77
13281--13545
134
2.0
134
97
0
503
46
8
21
24
1.79
13963--14006
20
2.2
20
83
4
61
56
4
0
38
1.20
13971--14009
20
2.0
20
94
0
69
56
5
0
38
1.22
14046--14152
54
2.0
54
86
0
151
12
30
35
21
1.90
14306--14352
17
2.7
18
81
12
53
46
0
23
29
1.52
21671--21713
6
7.3
6
84
12
54
0
2
16
81
0.79
21662--21713
11
4.8
11
81
13
63
0
3
17
78
0.89
21672--21713
17
2.4
17
88
11
59
0
2
16
80
0.81
31460--31533
28
2.5
29
82
8
87
24
18
13
43
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31680--31772
31
3.0
31
90
0
150
45
12
12
29
1.80
31923--32162
125
1.9
125
83
3
313
53
1
10
34
1.44
32135--32168
13
2.5
13
90
4
50
64
2
2
29
1.22
32759--32866
31
3.5
31
93
1
171
31
16
10
41
1.82
32979--33058
29
2.7
29
88
3
106
40
12
18
28
1.87
34921--35842
440
2.1
438
91
1
1488
42
18
13
26
1.87
37106--37144
20
2.0
20
89
0
60
71
0
28
0
0.86
37102--37145
16
2.8
16
82
6
54
75
0
25
0
0.81
37076--37145
25
2.6
28
76
13
76
72
1
24
1
1.00
37209--37278
27
2.6
27
73
13
72
37
18
11
32
1.87

Tables:   1

The End!