Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018452.1 Corchorus olitorius cultivar O-4 contig18485, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57146

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1408--1477
27
2.6
27
73
13
72
37
18
11
32
1.87
5683--5748
3
22.0
3
96
0
123
68
0
0
31
0.90
7296--7359
21
3.2
20
77
8
67
37
10
20
31
1.87
7410--7457
19
2.5
19
82
0
60
45
16
20
16
1.85
7638--7667
6
4.8
6
92
8
51
70
0
0
30
0.88
8585--8630
18
2.6
18
92
0
74
41
8
4
45
1.55
13686--13757
31
2.4
31
85
2
101
16
26
20
36
1.94
38627--38651
13
1.9
13
100
0
50
24
28
16
32
1.96
38009--39257
631
2.0
631
94
0
2203
19
23
25
31
1.98
41808--41833
2
13.0
2
100
0
52
50
0
0
50
1.00
42207--42314
55
1.9
56
90
1
173
34
21
15
28
1.94
54579--54617
19
2.1
19
100
0
78
15
5
38
41
1.69
54809--54843
2
17.5
2
100
0
70
48
0
0
51
1.00
55623--56025
198
2.0
198
98
0
779
37
14
5
42
1.70

Tables:   1

The End!