Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018454.1 Corchorus olitorius cultivar O-4 contig18487, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125494

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
134--163
14
2.1
14
93
0
51
3
3
6
86
0.77
1225--1278
21
2.5
22
78
9
56
42
22
25
9
1.83
2482--2679
22
9.1
22
73
8
154
31
11
16
40
1.84
2491--2660
65
2.6
64
80
5
164
31
10
15
41
1.82
2489--2679
87
2.2
87
80
9
203
31
10
16
40
1.83
2513--2660
65
2.3
66
82
4
167
32
10
14
41
1.81
8543--8585
20
2.2
20
86
0
59
13
23
18
44
1.86
14096--14138
20
2.2
20
86
0
59
13
23
18
44
1.86
19055--19094
20
2.0
20
85
0
53
45
27
10
17
1.80
19232--19803
202
2.8
200
90
1
892
32
15
15
36
1.89
27718--27777
23
2.6
21
75
17
57
46
6
31
15
1.71
30767--30796
15
2.0
15
93
0
51
36
0
0
63
0.95
30841--30947
52
2.1
52
94
0
187
28
15
17
37
1.91
37415--37453
2
19.5
2
100
0
78
48
0
0
51
1.00
37723--37777
26
2.1
26
100
0
110
41
10
10
36
1.75
41383--41648
131
2.0
132
89
2
410
35
15
17
31
1.91
41600--41689
41
2.2
41
89
0
135
40
16
17
25
1.91
41423--41690
131
2.0
129
79
7
281
36
16
18
28
1.92
41468--41834
173
2.1
172
84
2
477
36
16
17
29
1.92
58185--58594
202
2.0
202
94
1
723
36
10
8
44
1.69
59106--59175
36
1.9
36
91
0
113
60
8
10
21
1.55
60448--60556
58
1.9
58
85
9
152
33
19
13
33
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64858--64883
13
2.0
13
100
0
52
30
30
7
30
1.85
75890--75950
29
2.1
29
96
0
113
31
1
14
52
1.52
84455--84484
14
2.1
14
100
0
60
63
6
0
30
1.20
84458--84511
15
3.7
15
82
7
58
66
3
1
27
1.19
85857--86009
78
2.0
78
96
0
279
33
14
1
50
1.51
95509--95580
35
2.0
34
82
12
83
25
13
9
51
1.72
95611--95647
2
18.5
2
100
0
74
48
0
0
51
1.00
99997--100022
3
8.7
3
100
0
52
65
0
34
0
0.93
100021--100047
3
9.0
3
100
0
54
33
0
33
33
1.58
101654--101684
7
4.3
7
95
4
53
0
12
16
70
1.16
105828--105859
2
16.0
2
93
0
55
46
0
0
53
1.00
113542--113568
14
1.9
14
100
0
54
29
7
3
59
1.42
114787--114819
6
5.5
6
96
0
57
12
36
0
51
1.39
114786--114827
18
2.3
18
83
0
57
11
40
0
47
1.40
115327--115375
24
2.0
24
100
0
98
24
4
30
40
1.74
125363--125410
25
1.9
25
91
0
78
43
4
4
47
1.41

Tables:   1

The End!