Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018456.1 Corchorus olitorius cultivar O-4 contig18489, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3320
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37


Found at i:65 original size:21 final size:21

Alignment explanation


    Indices: 21--66  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 21

         11 TTTTTAAGCA

                  *           ** 
         21 TTTTTAGTAACCTTATAAGTT
          1 TTTTTAATAACCTTATAAAAT

                      *          
         42 TTTTTAATAATCTTATAAAAT
          1 TTTTTAATAACCTTATAAAAT

                
         63 TTTT
          1 TTTT

         67 AACACTTTTT


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.33, C:0.07, G:0.04, T:0.57


Consensus pattern (21 bp):   
TTTTTAATAACCTTATAAAAT
Done.