Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018457.1 Corchorus olitorius cultivar O-4 contig18490, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46414

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--37
2
17.5
2
100
0
70
51
0
0
48
1.00
221--335
56
2.0
57
93
1
196
33
22
1
41
1.64
401--481
42
1.9
42
97
0
153
29
7
16
46
1.73
10728--10778
22
2.5
20
79
17
59
43
11
3
41
1.60
10740--10861
22
5.5
22
70
9
70
38
12
8
40
1.73
10993--11237
22
11.8
20
74
16
171
38
17
7
35
1.78
10993--11237
41
5.9
41
78
9
205
38
17
7
35
1.78
10992--11367
22
17.5
22
69
18
143
38
16
6
37
1.75
11354--11470
61
1.9
60
84
8
157
38
21
6
33
1.80
11411--11455
22
2.0
22
91
0
72
44
15
6
33
1.73
11422--11504
22
3.7
22
74
3
76
33
25
7
33
1.83
11523--11560
18
2.1
19
95
5
69
36
10
15
36
1.82
11666--11713
22
2.2
22
88
7
71
31
29
10
29
1.90
11755--11870
44
2.6
44
76
2
108
42
16
8
32
1.78
11794--11860
22
3.0
22
80
8
91
43
19
8
28
1.81
13109--13196
45
2.0
45
93
0
149
37
22
4
35
1.75
13851--13878
12
2.3
12
100
0
56
17
0
0
82
0.68
14759--15065
150
2.0
151
92
1
510
53
2
8
34
1.46
20410--20490
39
2.1
39
86
4
110
23
45
9
20
1.81
32285--32379
33
2.6
37
79
16
117
21
34
15
28
1.94
35171--35242
36
2.0
36
100
0
144
27
11
33
27
1.91
41212--41278
3
22.3
3
96
0
125
0
31
0
68
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41273--41299
4
6.8
4
100
0
54
0
22
0
77
0.76
44545--44670
64
2.0
64
100
0
252
25
17
24
32
1.97
45289--45318
15
2.0
15
93
0
51
43
26
10
20
1.83

Tables:   1

The End!