Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018458.1 Corchorus olitorius cultivar O-4 contig18491, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 39957
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32


Found at i:13664 original size:32 final size:32

Alignment explanation


    Indices: 13618--13682  Score: 94
    Period size: 32  Copynumber: 2.0  Consensus size: 32

      13608 GTATGATGAA

                     *            *    *    
      13618 AGAAAAACCTATATTGACAAGCTAATGTCAAC
          1 AGAAAAACCCATATTGACAAGCAAATGACAAC

                  *                         
      13650 AGAAAATCCCATATTGACAAGCAAATGACAAC
          1 AGAAAAACCCATATTGACAAGCAAATGACAAC

             
      13682 A
          1 A

      13683 TTTTGGTTAG


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  32   29  1.00

ACGTcount: A:0.49, C:0.20, G:0.12, T:0.18


Consensus pattern (32 bp):   
AGAAAAACCCATATTGACAAGCAAATGACAAC

Found at i:22217 original size:1 final size:1

Alignment explanation


    Indices: 22211--22235  Score: 50
    Period size: 1  Copynumber: 25.0  Consensus size: 1

      22201 TTTAGTTGGA

                                     
      22211 TTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTT

      22236 ATGCTGAAGT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   24  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Done.