Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018462.1 Corchorus olitorius cultivar O-4 contig18495, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67514

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13955--13983
2
14.5
2
100
0
58
48
0
0
51
1.00
24443--24470
5
5.6
5
100
0
56
57
21
0
21
1.41
26859--26891
14
2.4
14
100
0
66
36
24
33
6
1.80
41749--41777
2
14.5
2
100
0
58
51
0
0
48
1.00
42350--42627
138
2.0
138
99
0
547
21
6
24
47
1.73
42657--42736
40
2.0
40
97
0
151
22
8
32
36
1.85
42928--42957
15
2.0
15
93
0
51
6
16
3
73
1.18
44833--45386
211
2.6
208
85
7
686
34
18
9
38
1.83
45605--45731
62
2.0
63
90
1
202
28
11
18
40
1.86
49333--49366
12
3.0
12
87
12
54
50
0
14
35
1.44
52378--52529
76
2.0
76
98
0
295
37
17
8
36
1.80
52735--52833
47
2.1
47
100
0
198
41
14
12
32
1.82
66922--66961
20
2.0
20
100
0
80
30
15
20
35
1.93
67243--67343
31
3.3
30
76
5
105
32
22
10
33
1.89

Tables:   1

The End!