Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018463.1 Corchorus olitorius cultivar O-4 contig18496, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64562

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
499--599
31
3.3
31
74
10
100
32
21
10
34
1.88
1414--1514
31
3.3
31
76
5
107
34
10
21
32
1.88
8433--8471
21
1.9
21
89
5
62
35
0
2
61
1.10
20546--21266
199
3.6
198
87
4
999
33
17
13
35
1.89
31616--31694
41
1.9
41
87
5
115
43
12
13
30
1.82
33410--33555
77
1.9
77
89
0
229
21
17
28
32
1.96
35099--35193
45
2.2
43
88
7
140
40
20
5
34
1.75
61102--61152
14
3.6
14
72
0
57
3
21
7
66
1.34
61104--61171
28
2.4
28
100
0
136
4
22
11
61
1.47
61118--61166
14
3.5
14
71
0
53
2
22
16
59
1.47
62274--62325
17
3.1
17
97
0
95
53
15
11
19
1.71

Tables:   1

The End!