Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018466.1 Corchorus olitorius cultivar O-4 contig18499, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80085

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1562--1722
69
2.3
70
87
5
229
25
22
30
21
1.99
6484--7367
324
2.7
325
78
6
832
35
14
14
35
1.87
7471--8131
335
2.0
333
83
5
845
35
15
14
33
1.89
8557--8586
15
1.9
16
93
6
53
53
3
0
43
1.17
10844--10875
7
4.6
7
100
0
64
59
0
12
28
1.34
25429--25461
16
2.1
16
94
0
57
33
0
48
18
1.48
27201--27225
12
2.1
12
100
0
50
56
12
24
8
1.62
29654--29686
12
2.7
12
95
4
57
72
0
0
27
0.85
29994--30023
15
2.0
15
93
0
51
36
6
10
46
1.64
31484--31712
95
2.4
95
97
0
422
25
34
16
22
1.95
32210--32260
26
1.9
27
92
4
86
23
17
9
49
1.77
32958--33223
106
2.5
106
81
10
326
43
9
7
40
1.64
38550--38924
188
2.0
187
87
0
543
29
17
18
35
1.93
53306--53336
6
5.2
6
92
0
53
16
38
0
45
1.47
55349--55441
48
2.0
47
97
2
177
37
12
15
34
1.85
56207--56376
85
2.0
85
92
0
286
48
18
15
17
1.81
66610--66652
18
2.4
19
92
7
72
51
23
9
16
1.73
67789--68047
126
2.0
127
87
8
373
49
1
10
37
1.49
71122--71186
32
2.0
32
100
0
130
36
3
18
41
1.66
71329--71411
22
3.8
22
78
0
76
42
8
9
39
1.68
71593--71636
13
3.7
13
74
22
51
68
0
0
31
0.90
71593--71636
21
2.0
22
95
4
81
68
0
0
31
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74935--74999
31
2.1
31
100
0
130
33
18
16
30
1.94
77029--77108
29
2.9
29
78
14
105
42
13
6
37
1.70
77032--77119
29
3.1
28
75
18
94
43
11
6
38
1.67
79345--79369
2
12.5
2
100
0
50
48
0
0
52
1.00
79541--79744
104
2.0
104
88
1
302
13
27
9
49
1.73

Tables:   1

The End!