Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018467.1 Corchorus olitorius cultivar O-4 contig18500, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3158
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.32


Found at i:1664 original size:20 final size:20

Alignment explanation


    Indices: 1610--1664  Score: 65
    Period size: 25  Copynumber: 2.5  Consensus size: 20

       1600 GTTTTGGTAT

                                
       1610 AAGAAGAAACTCCACTTAAC
          1 AAGAAGAAACTCCACTTAAC

                                     
       1630 AAGAAACTGAGAAACTCCACTTAAC
          1 AAG--A---AGAAACTCCACTTAAC

                      
       1655 AAGAAGAAAC
          1 AAGAAGAAAC

       1665 ATGAAGAGTT


Statistics
Matches: 30,  Mismatches: 0, Indels: 10
        0.75            0.00        0.25

Matches are distributed among these distances:
  20    9  0.30
  22    1  0.03
  23    1  0.03
  25   19  0.63

ACGTcount: A:0.53, C:0.22, G:0.13, T:0.13


Consensus pattern (20 bp):   
AAGAAGAAACTCCACTTAAC
Done.