Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018470.1 Corchorus olitorius cultivar O-4 contig18503, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11150
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:4713 original size:15 final size:15

Alignment explanation


    Indices: 4693--4724  Score: 64
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       4683 TTTCTCAACT

                           
       4693 CCAAGCATTAATCTG
          1 CCAAGCATTAATCTG

                           
       4708 CCAAGCATTAATCTG
          1 CCAAGCATTAATCTG

              
       4723 CC
          1 CC

       4725 CACCAACATC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.31, C:0.31, G:0.12, T:0.25


Consensus pattern (15 bp):   
CCAAGCATTAATCTG

Found at i:7547 original size:28 final size:28

Alignment explanation


    Indices: 7494--7549  Score: 69
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       7484 AACATTAATC

                              ** *      
       7494 AAGTATAAAAGTATATTACCTCAAAAAA
          1 AAGTATAAAAGTATATTAAATAAAAAAA

                                 *      
       7522 AAGTATAAAAGTATA-TAAATGAAAAAA
          1 AAGTATAAAAGTATATTAAATAAAAAAA

             
       7549 A
          1 A

       7550 TTTGCAAATT


Statistics
Matches: 25,  Mismatches: 3, Indels: 1
        0.86            0.10        0.03

Matches are distributed among these distances:
  27   10  0.40
  28   15  0.60

ACGTcount: A:0.62, C:0.05, G:0.09, T:0.23


Consensus pattern (28 bp):   
AAGTATAAAAGTATATTAAATAAAAAAA
Done.