Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018472.1 Corchorus olitorius cultivar O-4 contig18505, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4256
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32


Found at i:2111 original size:17 final size:17

Alignment explanation


    Indices: 2089--2122  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       2079 GAGATATTTT

                             
       2089 AGTGATTTCACTAACAA
          1 AGTGATTTCACTAACAA

                      *      
       2106 AGTGATTTCAGTAACAA
          1 AGTGATTTCACTAACAA

       2123 TCTCTCAACT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29


Consensus pattern (17 bp):   
AGTGATTTCACTAACAA
Done.