Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018476.1 Corchorus olitorius cultivar O-4 contig18509, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11697
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35


Found at i:11449 original size:12 final size:12

Alignment explanation


    Indices: 11429--11466  Score: 62
    Period size: 11  Copynumber: 3.3  Consensus size: 12

      11419 TAGTTTTCGT

                        
      11429 AAAAA-AAAAAC
          1 AAAAACAAAAAC

                        
      11440 AAAAACAAAAAC
          1 AAAAACAAAAAC

                        
      11452 AAAAAC-AAAAC
          1 AAAAACAAAAAC

                
      11463 AAAA
          1 AAAA

      11467 CTGGTAGCTG


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
  11   14  0.54
  12   12  0.46

ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00


Consensus pattern (12 bp):   
AAAAACAAAAAC

Found at i:11467 original size:5 final size:6

Alignment explanation


    Indices: 11429--11466  Score: 62
    Period size: 6  Copynumber: 6.7  Consensus size: 6

      11419 TAGTTTTCGT

                                                          
      11429 AAAAA- AAAAAC AAAAAC AAAAAC AAAAAC -AAAAC AAAA
          1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAA

      11467 CTGGTAGCTG


Statistics
Matches: 31,  Mismatches: 0, Indels: 3
        0.91            0.00        0.09

Matches are distributed among these distances:
   5   10  0.32
   6   21  0.68

ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00


Consensus pattern (6 bp):   
AAAAAC
Done.