Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018486.1 Corchorus olitorius cultivar O-4 contig18519, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53551

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1518--1577
18
3.3
18
73
0
57
20
25
25
30
1.99
9933--9981
10
4.6
11
75
17
50
51
2
0
46
1.12
15688--15769
22
3.7
22
80
9
96
39
12
10
37
1.78
15688--15832
22
6.5
22
71
12
93
37
13
11
37
1.81
18637--18726
28
3.2
28
87
1
128
16
15
25
42
1.88
18699--18745
18
2.5
19
86
3
69
19
17
25
38
1.92
29225--29261
17
2.1
18
95
5
67
56
5
18
18
1.60
29679--29717
18
2.2
18
85
0
51
25
51
15
7
1.70
29679--29717
12
3.2
12
85
0
51
25
51
15
7
1.70
30657--30722
33
2.1
32
88
8
100
48
4
30
16
1.66
31451--31481
2
15.5
2
93
0
53
48
3
0
48
1.17
35468--35503
19
1.9
18
88
5
54
33
22
2
41
1.68
36342--36378
18
2.1
18
90
5
58
37
10
5
45
1.62
37040--37098
30
2.0
30
90
6
93
61
5
11
22
1.50
42091--42126
19
1.9
18
88
5
54
33
22
2
41
1.68
53405--53451
22
2.2
22
88
7
71
31
12
8
46
1.72

Tables:   1

The End!