Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018487.1 Corchorus olitorius cultivar O-4 contig18520, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39574

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1112--1138
12
2.2
12
100
0
54
70
7
14
7
1.32
6053--6088
18
2.0
18
100
0
72
27
22
11
38
1.88
6235--6259
2
12.5
2
100
0
50
0
0
52
48
1.00
6787--6834
21
2.3
21
92
3
80
41
20
8
29
1.81
12803--12862
30
2.0
30
83
3
77
33
25
11
30
1.91
13121--13181
29
2.1
30
87
3
88
29
14
24
31
1.95
14916--14955
18
2.1
20
86
9
57
22
25
17
35
1.95
24788--24830
22
2.0
22
81
9
52
16
9
11
62
1.53
25726--25761
19
1.9
18
88
5
54
33
22
2
41
1.68
29631--29660
11
2.7
11
100
0
60
0
26
60
13
1.34
31931--31979
25
2.0
25
95
0
89
14
32
18
34
1.91
33568--33616
25
2.0
25
95
0
89
14
32
18
34
1.91
37023--37057
2
18.0
2
94
5
63
51
0
0
48
1.00
39176--39221
18
2.4
19
89
7
67
34
2
13
50
1.53
39177--39248
28
2.5
28
86
2
90
34
2
11
51
1.52

Tables:   1

The End!