Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018488.1 Corchorus olitorius cultivar O-4 contig18521, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23314

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
170--205
18
1.9
19
88
5
56
58
8
0
33
1.28
234--267
17
2.0
17
88
0
50
64
8
0
26
1.22
345--428
34
2.5
33
84
1
105
11
38
35
14
1.83
7297--7358
24
2.5
24
82
14
74
58
1
0
40
1.08
7298--7348
18
3.0
16
79
20
59
56
0
0
43
0.99
7348--7617
134
2.0
135
96
1
497
41
11
10
35
1.77
8385--9170
211
3.7
211
92
1
1281
36
20
7
34
1.82
9167--9806
214
3.0
212
93
2
1097
35
8
20
36
1.83
9889--10639
211
3.6
211
95
0
1333
34
7
20
36
1.82
13839--14045
102
2.0
102
100
0
414
34
14
18
32
1.91
21401--21435
6
5.8
6
90
9
54
0
0
11
88
0.51
21401--21436
13
2.8
13
95
4
65
0
0
11
88
0.50
21401--21436
19
1.9
18
94
5
63
0
0
11
88
0.50
23288--23314
1
27.0
1
100
0
54
100
0
0
0
0.00

Tables:   1

The End!