Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018489.1 Corchorus olitorius cultivar O-4 contig18522, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61800

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
965--1032
33
2.0
34
94
5
120
11
32
5
50
1.63
965--1052
33
2.5
33
85
7
113
11
28
5
54
1.58
5313--5770
233
2.0
234
96
0
846
36
8
27
27
1.86
7931--7957
3
9.0
3
100
0
54
33
0
0
66
0.92
9704--9728
13
1.9
13
100
0
50
48
20
16
16
1.82
12993--13365
187
2.0
188
93
1
640
42
16
15
26
1.87
24601--24633
13
2.4
14
90
10
59
51
6
6
36
1.51
26168--26232
6
11.0
6
88
8
89
35
1
0
63
1.04
31875--31935
27
2.3
27
82
0
68
34
13
22
29
1.92
40883--40917
18
1.9
18
88
0
52
11
20
22
45
1.82
41917--41954
13
2.9
13
88
7
51
73
0
26
0
0.83
43832--43862
11
2.8
11
90
0
53
35
22
9
32
1.87
43855--43894
13
3.1
13
85
0
53
25
15
15
45
1.84
52309--52338
11
2.8
11
95
5
53
66
6
16
10
1.41
53430--53466
2
18.5
2
100
0
74
48
0
0
51
1.00
54508--54552
21
2.2
21
84
7
58
37
15
31
15
1.89
56160--56288
22
5.9
22
76
7
77
40
7
12
39
1.72
56229--56289
22
2.8
22
90
5
88
44
13
4
37
1.65
56318--56356
12
3.6
12
80
19
50
25
28
15
30
1.96
57434--57462
2
14.5
2
100
0
58
51
0
0
48
1.00
60562--60618
19
2.9
19
76
5
60
26
17
14
42
1.87
60743--60794
3
17.3
3
100
0
104
32
0
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61752--61799
15
3.2
16
82
11
57
77
0
18
4
0.93

Tables:   1

The End!