Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018490.1 Corchorus olitorius cultivar O-4 contig18523, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41435

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
619--693
28
2.7
28
81
2
89
28
21
10
40
1.86
2142--2230
3
29.7
3
100
0
178
33
0
0
66
0.92
14044--14323
21
13.6
21
71
14
190
53
4
22
19
1.63
14183--14428
7
34.9
7
68
14
85
54
4
21
19
1.62
14238--14428
21
8.7
23
71
19
108
55
4
19
20
1.59
14234--14326
29
3.4
28
74
21
99
54
4
19
21
1.61
14234--14354
51
2.3
50
87
7
161
55
4
18
21
1.61
14275--14333
29
2.0
29
90
0
91
54
8
16
20
1.68
14094--14414
171
1.9
161
86
8
448
53
4
21
19
1.64
14354--14455
49
2.1
48
87
5
125
54
2
23
18
1.57
14493--14531
18
2.2
18
86
9
53
64
0
23
12
1.28
14518--14624
35
3.1
35
94
1
180
54
3
15
26
1.58
21502--21534
12
2.8
12
90
4
50
36
6
9
48
1.60
21854--21887
17
2.0
17
94
0
59
47
5
8
38
1.59
24006--24058
22
2.4
22
78
12
56
18
3
13
64
1.43
26789--26906
52
2.3
53
84
8
165
25
16
17
39
1.91
31276--31320
12
3.5
13
81
9
56
57
11
0
31
1.33
35170--35194
2
12.5
2
100
0
50
52
48
0
0
1.00
40354--40406
26
2.0
26
85
7
72
28
15
13
43
1.84

Tables:   1

The End!