genome.fa.s18494.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018494.1 Corchorus olitorius cultivar O-4 contig18527, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28750

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1715--1758	21	2.0	21	82	4	52	43	9	27	20	1.82
3386--3428	9	4.8	9	88	8	61	76	0	13	9	1.01
3486--3530	13	3.4	13	87	3	54	35	11	6	46	1.66
5210--5350	69	2.0	69	87	0	201	26	25	16	31	1.96
5618--5925	149	2.1	150	88	1	447	26	21	17	34	1.95
5970--6426	38	12.2	38	73	15	290	26	13	15	45	1.83
6051--6117	32	2.1	32	88	0	98	25	16	14	43	1.86
6021--6155	70	1.9	70	87	3	200	25	12	15	46	1.81
5975--6193	108	2.0	108	83	3	271	25	13	16	44	1.85
6349--6427	39	2.0	39	82	0	95	30	13	13	41	1.84
11747--11789	23	1.9	22	90	4	68	46	27	6	18	1.75
11750--11795	21	2.3	21	78	14	53	41	30	4	23	1.74
14924--15066	35	4.1	35	84	3	189	39	9	16	35	1.80
14929--15017	16	5.2	16	68	15	61	37	8	15	38	1.79
14945--15002	19	3.2	19	69	14	59	37	5	17	39	1.72
14940--15065	19	7.1	19	65	18	56	39	8	15	36	1.78
18337--18461	42	3.0	42	83	2	162	30	12	24	33	1.91
18439--18691	62	4.1	61	85	3	310	37	15	24	23	1.93
18839--18919	33	2.4	34	83	6	92	35	16	27	20	1.94
18592--18895	158	1.9	157	85	4	411	35	16	24	23	1.95
19075--19198	48	2.6	48	85	2	160	39	18	25	16	1.91
19598--19623	13	2.0	13	100	0	52	46	7	15	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19945--20555	54	11.4	54	85	3	711	33	21	17	27	1.96
19945--20533	214	2.7	212	87	4	776	33	21	16	27	1.95
20562--20633	36	2.0	36	89	5	110	43	19	16	20	1.89
20562--20656	36	2.7	35	78	16	92	44	20	15	20	1.87
27150--27205	14	4.2	13	80	15	60	35	10	7	46	1.66
27143--27199	14	4.3	12	79	18	60	38	12	7	42	1.70
27262--27300	13	2.9	13	81	7	51	2	17	2	76	1.01

Tables:   1

The End!