genome.fa.s18498.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018498.1 Corchorus olitorius cultivar O-4 contig18531, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68279

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4421--4676	62	4.1	63	81	8	283	35	11	24	28	1.91
4421--4650	62	3.7	62	84	5	293	34	12	24	28	1.91
9365--9661	150	2.0	150	96	0	549	44	13	16	25	1.84
9694--9771	27	2.9	27	82	3	86	37	26	17	17	1.93
9982--10305	67	4.8	67	86	3	404	42	16	17	24	1.88
12142--12184	13	3.3	13	81	9	52	16	6	16	60	1.56
13177--13241	31	2.2	29	88	5	94	29	23	13	33	1.93
13963--14027	31	2.2	29	83	5	76	36	12	23	27	1.90
15545--15631	41	2.1	42	85	6	115	26	11	32	29	1.91
17949--17989	20	2.0	20	95	0	73	51	19	12	17	1.76
21423--22331	435	2.1	435	84	5	1171	30	15	12	41	1.85
23244--23511	22	12.0	22	69	10	114	35	15	10	37	1.83
26311--26367	6	9.5	6	84	7	71	0	21	0	78	0.74
26481--26524	6	7.3	6	86	0	52	0	22	0	77	0.77
28461--28612	76	2.0	76	81	7	175	17	29	28	24	1.97
28970--29197	22	10.5	22	67	16	109	34	14	8	42	1.77
29098--29225	64	2.0	66	81	3	152	38	13	8	39	1.75
29278--29495	88	2.4	90	84	6	275	34	15	10	39	1.82
29278--29697	22	18.9	22	72	11	212	35	16	9	37	1.82
29574--29719	44	3.3	43	78	7	125	37	18	8	34	1.82
29723--29886	22	7.4	22	75	9	136	35	18	9	35	1.84
46018--46165	38	3.9	38	90	1	217	24	18	34	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46195--46232	6	6.3	6	93	0	67	13	0	34	52	1.40
46824--46855	6	5.3	6	100	0	64	50	34	0	15	1.45
46885--47032	77	1.9	75	87	2	215	24	34	18	22	1.96
46885--47032	38	3.9	38	87	1	217	24	34	18	22	1.96
47199--47232	15	2.2	16	89	5	52	50	5	2	41	1.42
48921--48964	21	2.1	21	91	0	70	29	6	20	43	1.78
57562--57612	7	6.9	7	79	16	50	80	0	0	19	0.71
57562--57605	13	3.5	13	81	12	65	81	0	0	18	0.68
57568--57612	4	12.5	4	78	21	55	80	0	0	20	0.72
57562--57612	11	4.9	11	83	11	72	80	0	0	19	0.71
59872--59899	12	2.3	12	100	0	56	50	0	50	0	1.00
59861--59906	18	2.5	19	74	19	53	56	0	43	0	0.99
61113--61155	16	2.5	18	81	7	54	41	9	0	48	1.35
67505--67549	22	2.0	22	82	0	54	42	11	6	40	1.67

Tables:   1

The End!