Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001850.1 Corchorus olitorius cultivar O-4 contig01850, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 784

Length: 1308
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39


Found at i:1264 original size:26 final size:27

Alignment explanation


    Indices: 1212--1264  Score: 74
    Period size: 26  Copynumber: 2.0  Consensus size: 27

       1202 ATATTTCTAA

                                  *    
       1212 ATTTTCATTATTAAAAAATATTTAATT
          1 ATTTTCATTATTAAAAAATATTAAATT

                                        
       1239 ATTTT-ATTATTAAAATAATA-TAAATT
          1 ATTTTCATTATTAAAA-AATATTAAATT

       1265 TAGATTATTC


Statistics
Matches: 24,  Mismatches: 1, Indels: 3
        0.86            0.04        0.11

Matches are distributed among these distances:
  26   15  0.62
  27    9  0.38

ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51


Consensus pattern (27 bp):   
ATTTTCATTATTAAAAAATATTAAATT

Done.