Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018500.1 Corchorus olitorius cultivar O-4 contig18533, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27000

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
720--951
118
2.0
118
97
0
437
19
24
29
26
1.98
4237--4269
1
33.0
1
100
0
66
100
0
0
0
0.00
6744--6822
39
2.0
39
95
0
140
32
13
16
36
1.88
12695--12751
29
2.0
29
89
0
87
24
5
31
38
1.78
12407--12807
206
1.9
208
94
2
707
29
10
24
35
1.88
22099--22153
22
2.6
22
83
8
71
40
10
5
43
1.63
22108--22166
22
2.6
23
84
10
77
40
13
5
40
1.67
22255--22305
22
2.3
22
83
6
59
41
17
5
35
1.74
22274--22640
22
16.7
22
66
14
75
36
17
9
36
1.83
22677--22749
22
3.4
22
78
1
85
38
15
6
39
1.74
22675--22770
43
2.2
44
81
1
113
38
12
7
41
1.71
22677--22770
22
4.3
21
76
10
66
39
12
6
41
1.69
22814--22965
22
7.0
22
73
10
91
35
18
9
36
1.83
23003--23256
22
11.7
21
73
7
125
37
18
9
35
1.83
23008--23173
44
3.8
43
76
4
154
35
18
9
36
1.84
23105--23214
43
2.6
43
77
8
109
38
21
6
33
1.79
23092--23287
44
4.5
44
76
5
146
38
19
8
33
1.83
22987--23303
22
14.5
22
71
9
107
38
17
9
34
1.82
23602--23639
10
3.9
10
83
16
53
52
0
15
31
1.43
24400--24531
65
2.0
65
100
0
264
43
10
12
34
1.76

Tables:   1

The End!