Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018504.1 Corchorus olitorius cultivar O-4 contig18537, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65663

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7056--7136
34
2.4
34
100
0
162
25
14
22
37
1.93
8229--8257
15
1.9
15
100
0
58
27
10
55
6
1.59
9257--9282
7
3.7
7
100
0
52
53
0
15
30
1.42
11446--11472
6
4.5
6
100
0
54
29
0
51
18
1.46
18919--18959
17
2.5
16
92
7
73
48
0
0
51
1.00
18916--18959
2
24.5
2
78
21
53
50
0
0
50
1.00
24523--24614
32
2.8
32
86
1
121
33
20
17
28
1.95
30450--30508
19
3.2
19
75
4
75
55
22
6
15
1.63
30425--30508
37
2.3
37
85
8
109
58
17
10
13
1.63
45982--46049
32
2.3
27
85
12
82
44
5
17
32
1.73
45979--46081
29
3.4
29
84
9
111
45
6
17
30
1.74
52964--53159
76
2.6
76
91
0
311
21
18
18
41
1.91
52962--53186
39
5.9
38
78
10
210
21
19
18
40
1.91
53095--53373
147
1.9
146
80
7
323
21
20
17
39
1.92
55435--55524
19
4.8
18
71
15
67
58
18
10
12
1.61
55435--55524
38
2.4
38
85
10
116
58
18
10
12
1.61
59182--59320
36
3.8
35
76
15
131
39
18
14
27
1.90
60323--60365
22
2.0
22
81
9
52
30
16
0
53
1.43
60611--60657
20
2.3
21
79
17
55
55
14
4
25
1.58
61848--61908
30
2.0
30
87
0
86
18
13
24
44
1.85
63101--63158
28
2.1
28
100
0
116
55
10
10
24
1.65
64053--64171
64
1.9
61
87
5
175
42
13
15
29
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64993--65040
24
2.0
24
95
0
87
52
16
14
16
1.76

Tables:   1

The End!