Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018505.1 Corchorus olitorius cultivar O-4 contig18538, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40779

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3743--4082
117
2.9
113
86
6
459
28
19
17
34
1.95
3743--4085
115
3.0
113
87
4
481
27
19
17
34
1.95
6738--6815
41
1.9
41
84
10
106
64
8
7
19
1.47
13975--14015
21
2.0
21
85
0
55
4
48
19
26
1.69
18485--18529
21
2.1
21
95
0
81
28
8
22
40
1.84
18699--18739
21
2.0
21
85
0
55
17
41
26
14
1.88
18996--19040
2
22.5
2
100
0
90
48
51
0
0
1.00
23427--23480
21
2.6
21
82
5
56
18
27
29
24
1.98
23414--23563
76
2.0
76
80
7
171
17
29
28
24
1.97
32257--32781
30
17.7
30
83
7
567
31
19
18
30
1.96
32313--32779
209
2.3
205
92
2
765
31
19
18
30
1.96
32718--32778
27
2.3
27
94
2
97
36
18
16
29
1.92
37292--37573
143
2.0
143
85
2
388
32
18
18
30
1.95
37403--37819
210
2.0
209
88
2
622
35
17
18
27
1.94
39148--39196
2
24.5
2
83
8
55
48
4
4
42
1.40
39164--39199
18
2.0
18
100
0
72
50
11
0
38
1.38
39362--39398
18
2.1
18
90
5
58
45
5
13
35
1.66
39549--39785
22
11.0
22
74
10
98
38
16
11
33
1.84
39585--39792
22
9.7
21
75
14
133
39
14
11
34
1.82

Tables:   1

The End!