Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018507.1 Corchorus olitorius cultivar O-4 contig18540, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31639

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1936--1965
12
2.5
12
100
0
60
26
20
23
30
1.98
5892--5919
2
14.0
2
100
0
56
50
0
0
50
1.00
8315--8355
2
20.5
2
100
0
82
48
0
0
51
1.00
10103--10265
60
2.7
60
87
4
231
33
19
20
26
1.96
10343--10435
29
3.1
29
70
11
89
31
18
17
33
1.94
10308--10470
60
2.7
60
89
0
245
27
18
19
34
1.95
10367--10470
31
3.4
30
76
5
111
27
20
18
33
1.96
10988--11055
33
2.1
33
100
0
136
39
2
20
36
1.68
11087--11129
18
2.4
18
100
0
86
27
16
27
27
1.97
15893--15926
17
2.0
17
94
0
59
67
20
11
0
1.21
17622--17767
75
1.9
76
95
1
267
26
21
13
38
1.90
18351--18397
13
3.8
12
83
13
60
42
0
2
55
1.12
18568--18633
16
4.1
16
71
11
55
40
36
15
7
1.75
22141--22194
14
3.9
14
85
0
81
18
11
9
61
1.55
22141--22201
28
2.2
28
93
0
104
19
11
9
59
1.60
22101--22201
14
7.0
13
72
17
76
17
10
10
60
1.58
23482--23520
14
2.9
14
84
3
53
30
5
30
33
1.79
25856--25895
13
3.1
13
81
0
53
30
0
0
70
0.88
30818--30860
22
1.9
23
86
13
63
25
9
6
58
1.54

Tables:   1

The End!