Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018514.1 Corchorus olitorius cultivar O-4 contig18547, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39268

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
404--465
21
3.0
21
97
0
115
40
4
30
24
1.76
1846--2431
290
2.0
290
97
0
1100
24
20
19
34
1.96
7674--7721
24
2.0
25
84
12
64
64
6
12
16
1.46
14492--14535
22
2.1
20
83
8
52
20
34
13
31
1.92
19617--19648
16
2.0
16
93
0
55
43
28
6
21
1.77
25845--25901
19
3.2
18
73
7
53
57
0
1
40
1.09
26470--26499
11
2.8
11
95
5
53
53
20
0
26
1.46
27930--28058
49
2.7
49
89
2
181
27
20
3
48
1.67
32108--32132
6
4.2
6
100
0
50
48
32
0
20
1.50
38313--38351
2
19.0
2
94
5
69
48
2
0
48
1.15
39220--39260
2
20.5
2
100
0
82
51
0
0
48
1.00

Tables:   1

The End!