Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018515.1 Corchorus olitorius cultivar O-4 contig18548, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27614

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--119
22
5.4
22
75
11
100
40
11
9
38
1.73
45--152
44
2.4
45
80
10
125
40
14
7
37
1.74
3011--3134
2
62.0
2
81
0
122
50
3
2
44
1.31
4533--4572
2
19.5
2
89
5
62
47
2
2
47
1.29
5757--5901
31
4.7
31
93
1
247
32
20
17
28
1.96
5755--5902
61
2.4
61
94
1
251
31
20
17
29
1.96
5755--6001
31
7.8
32
87
4
208
34
18
15
31
1.92
5880--6001
33
3.8
32
87
3
147
37
15
13
33
1.86
6097--6341
129
1.9
129
96
0
454
32
15
25
26
1.95
13873--13916
22
2.0
22
82
13
54
31
31
4
31
1.78
24118--24144
13
2.1
13
100
0
54
33
7
22
37
1.82
24334--24365
16
2.0
16
93
0
55
31
21
15
31
1.95

Tables:   1

The End!