Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018516.1 Corchorus olitorius cultivar O-4 contig18549, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3160
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:16 original size:1 final size:1

Alignment explanation


    Indices: 11--42  Score: 64
    Period size: 1  Copynumber: 32.0  Consensus size: 1

          1 CAATAGAAAC

                                            
         11 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

         43 CCTTAAAACA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   31  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Done.