Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018517.1 Corchorus olitorius cultivar O-4 contig18550, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33375

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6290--6332
2
21.5
2
100
0
86
51
0
0
48
1.00
8457--8801
173
2.0
173
97
0
645
25
21
13
39
1.90
8523--8780
86
3.0
86
62
19
201
23
21
14
40
1.90
8533--8803
88
3.1
88
65
18
240
24
21
13
40
1.89
12814--12852
20
2.0
20
89
0
60
48
12
7
30
1.69
12970--12997
8
3.5
8
100
0
56
89
0
10
0
0.49
13805--13865
30
2.0
31
90
3
97
27
14
6
50
1.68
26300--26333
6
5.7
6
100
0
68
67
0
14
17
1.23
27457--27497
21
2.0
21
95
0
73
29
17
9
43
1.80
30421--30445
2
12.5
2
100
0
50
48
0
0
52
1.00
32857--32923
31
2.2
31
89
5
102
47
10
19
22
1.79
33055--33129
31
2.4
31
90
0
114
36
16
12
36
1.85

Tables:   1

The End!