Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018519.1 Corchorus olitorius cultivar O-4 contig18552, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117496

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1778--1828
19
2.7
19
77
14
61
47
0
1
50
1.12
14631--14656
13
2.0
13
100
0
52
15
0
30
53
1.42
15017--15067
19
2.7
19
77
14
61
47
0
1
50
1.12
23366--23406
21
2.0
21
90
0
64
31
17
24
26
1.97
32299--32328
1
30.0
1
100
0
60
0
0
0
100
0.00
32894--33203
155
2.0
155
100
0
620
36
16
12
33
1.87
36558--36587
15
2.0
15
100
0
60
46
20
0
33
1.51
37221--37356
56
2.4
56
92
3
220
14
22
18
44
1.86
37001--37323
166
2.0
159
92
5
540
12
24
22
40
1.88
40413--40497
42
2.0
42
86
0
116
23
11
29
35
1.90
47610--47645
18
2.1
18
89
5
56
44
5
11
38
1.63
53473--53512
21
1.9
21
84
0
53
17
25
25
32
1.97
58187--58229
21
2.0
21
100
0
86
51
4
25
18
1.66
71415--71758
171
2.0
171
98
0
670
33
13
22
30
1.93
81443--81492
3
16.7
3
100
0
100
66
0
0
34
0.92
81495--81520
7
3.7
7
100
0
52
30
0
0
69
0.89
81516--81584
34
2.1
32
94
5
120
36
0
15
47
1.46
81516--81576
6
10.5
6
96
3
108
34
0
16
49
1.46
85000--85029
14
2.1
15
93
6
53
40
0
6
53
1.27
85042--85066
12
2.1
12
100
0
50
36
8
0
56
1.29
87754--87830
38
2.0
38
92
5
127
41
10
14
33
1.80
91289--91344
28
2.0
28
92
0
94
25
26
1
46
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105072--105114
21
2.0
21
86
0
59
30
18
6
44
1.76
106983--107194
22
9.5
22
70
14
125
34
9
18
36
1.84
107223--107344
22
5.5
21
73
14
86
36
7
18
37
1.78
107223--107370
44
3.4
44
79
4
156
35
7
17
39
1.78
107243--107366
22
5.7
22
78
6
92
33
5
19
41
1.75
107223--107370
66
2.2
66
79
9
167
35
7
17
39
1.78
107390--107641
22
11.5
22
76
9
176
41
10
14
32
1.81
107624--107746
34
3.6
34
70
16
117
36
9
17
36
1.82
107615--107758
70
2.1
70
97
0
270
38
10
16
34
1.83
108041--108100
20
2.9
22
80
12
72
45
8
15
31
1.75
108049--108527
22
22.0
22
71
14
225
37
10
17
35
1.83
108500--108545
22
2.1
22
84
11
60
52
4
15
28
1.61
108665--108693
2
14.5
2
100
0
58
51
0
0
48
1.00
114797--114869
30
2.4
30
90
0
110
21
45
10
21
1.83
114911--114940
15
2.0
15
93
0
51
20
56
0
23
1.42
114886--115327
96
4.6
96
81
5
449
24
50
3
21
1.66
115269--115348
27
3.2
27
69
20
91
23
53
2
20
1.57
114885--115498
48
12.6
48
73
6
374
25
49
4
20
1.66
115081--115447
99
3.7
98
77
6
312
26
49
4
19
1.68
115233--115645
147
2.8
147
85
3
521
27
49
4
18
1.67
114885--115594
48
14.6
48
71
6
320
26
49
4
19
1.67
115750--115783
6
5.7
6
89
0
50
23
76
0
0
0.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
117024--117288
36
7.7
36
74
13
225
29
49
5
15
1.67
117024--117315
66
4.3
67
74
17
246
30
48
5
15
1.67
117019--117315
102
2.9
102
95
0
513
30
48
5
16
1.67
117070--117315
36
7.2
36
72
22
215
30
49
4
15
1.65
117275--117494
48
4.6
48
77
4
194
29
48
5
17
1.68

Tables:   1

The End!