Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018523.1 Corchorus olitorius cultivar O-4 contig18556, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 185503
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:796 original size:31 final size:31
Alignment explanation
Indices: 758--824 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
748 AAAAAACTGG
*
758 GACCAGTTATGCCGCGACAAGACTGGA-ACAT
1 GACCAGTTATGCAGCGACAAGACTGGAGA-AT
*
789 GACCAGTTATTCAGCGACAAGACTGGAGAAT
1 GACCAGTTATGCAGCGACAAGACTGGAGAAT
820 GACCA
1 GACCA
825 TTTCTGTCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
31 32 0.97
32 1 0.03
ACGTcount: A:0.34, C:0.24, G:0.25, T:0.16
Consensus pattern (31 bp):
GACCAGTTATGCAGCGACAAGACTGGAGAAT
Found at i:2016 original size:315 final size:315
Alignment explanation
Indices: 1444--2075 Score: 1165
Period size: 315 Copynumber: 2.0 Consensus size: 315
1434 TCCAATTATA
1444 AATAAAAAACAATAATTACAGGAAGTGAAAGTACTAAAAAATCAGTCAAAAGATTTAACCTTATT
1 AATAAAAAACAATAATTACAGGAAGTGAAAGTACTAAAAAATCAGTCAAAAGATTTAACCTTATT
**
1509 AATTTGATTACTATTTAGCTTGGTTTTTTCGTCATTTCAATATTGGTTTTTTCGTTATTCTCACA
66 AATTTGATTACTATACAGCTTGGTTTTTTCGTCATTTCAATATTGGTTTTTTCGTTATTCTCACA
* *
1574 AACTTCTAAGGGCATTCTTGACTTTCTATCAATTGAATATAATATAACATATCTATAAGTGGTTT
131 AACTTCTAAGGGCATTATTGACTTTCCATCAATTGAATATAATATAACATATCTATAAGTGGTTT
* * *
1639 GGCTAAACGGTCTATTTTAACATTATATAATTTTCTCCCCGGTTATCCGATTAAGGTGATTTAAG
196 GGCTAAACGGTCTATTTTAACATTATATAATTTTCTCACCAGTTATCCGATTAAGATGATTTAAG
1704 TGTCTATTAAAAGATTGTTCCATGATCTACAACTTTCATGAAGGACTCGAAAACT
261 TGTCTATTAAAAGATTGTTCCATGATCTACAACTTTCATGAAGGACTCGAAAACT
1759 AATAAAAAACAATAATTACAGGAAGTGAAAGTACTAAAAAATCAGTCAAAAGATTTAACCTTATT
1 AATAAAAAACAATAATTACAGGAAGTGAAAGTACTAAAAAATCAGTCAAAAGATTTAACCTTATT
1824 AATTTGATTACTATACAGCTTGGTTTTTTCGTCATTTCAATATTGGTTTTTTCGTTATTCTCACA
66 AATTTGATTACTATACAGCTTGGTTTTTTCGTCATTTCAATATTGGTTTTTTCGTTATTCTCACA
*
1889 AATTTCTAAGGGCATTATTGACTTTCCATCAATTGAATATAATATAACATATCTATAAGTGGTTT
131 AACTTCTAAGGGCATTATTGACTTTCCATCAATTGAATATAATATAACATATCTATAAGTGGTTT
* * *
1954 GGCTAAACGGTCTATTTTAACATTATATAATTTTGTCATCAGTTATTCGATTAAGATGATTTAAG
196 GGCTAAACGGTCTATTTTAACATTATATAATTTTCTCACCAGTTATCCGATTAAGATGATTTAAG
2019 TGTCTATTAAAAGATTGTTCCATGATCTACAACTTTCATGAAGGACTCGAAAACT
261 TGTCTATTAAAAGATTGTTCCATGATCTACAACTTTCATGAAGGACTCGAAAACT
2074 AA
1 AA
2076 ATTTAATGTT
Statistics
Matches: 306, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
315 306 1.00
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (315 bp):
AATAAAAAACAATAATTACAGGAAGTGAAAGTACTAAAAAATCAGTCAAAAGATTTAACCTTATT
AATTTGATTACTATACAGCTTGGTTTTTTCGTCATTTCAATATTGGTTTTTTCGTTATTCTCACA
AACTTCTAAGGGCATTATTGACTTTCCATCAATTGAATATAATATAACATATCTATAAGTGGTTT
GGCTAAACGGTCTATTTTAACATTATATAATTTTCTCACCAGTTATCCGATTAAGATGATTTAAG
TGTCTATTAAAAGATTGTTCCATGATCTACAACTTTCATGAAGGACTCGAAAACT
Found at i:2286 original size:178 final size:178
Alignment explanation
Indices: 2007--2339 Score: 508
Period size: 178 Copynumber: 1.9 Consensus size: 178
1997 TATTCGATTA
* *
2007 AGATGATTTAAGTGTCTATTAAAAGATTGTTCCATGATCTACAACTTTCATGAAGGACTCGAAAA
1 AGATGATTCAAGTGTCTATTAAAAGATTGTTCCACGATCTACAACTTTCATGAAGGACTCGAAAA
* *
2072 CTAAATTTAATGTTTCAAGTATCAAAAATACTTCCAAAAAATTTGTTGTTTCGGTTAACAGG-AA
66 CTAAATTTAATGTTTCAAGTATAAAAAATACTTCCAAAAAATTTGTTGTTTCAGTTAAC-GGAAA
*
2136 TAGACGGTCCACTTAATATTATATAACTTTTGCTTCAGTTGTCTAATTG
130 TAGACGGTCCACTTAATATTACATAACTTTTGCTTCAGTTGTCTAATTG
* * * *
2185 AGATGATTCAATTGTCTCTTGAAAGGTTGTTCCACGATCTACAACTTTCATGAAGGACTCGAAAA
1 AGATGATTCAAGTGTCTATTAAAAGATTGTTCCACGATCTACAACTTTCATGAAGGACTCGAAAA
* * *
2250 CTAAATTTATTG-TTCAAGGTATAAAAAATGCTTCCAAAGAATTTGTTGTTTCAGTTAACGGAAA
66 CTAAATTTAATGTTTCAA-GTATAAAAAATACTTCCAAAAAATTTGTTGTTTCAGTTAACGGAAA
**
2314 TAGACGGTTTACTTAATATTACATAA
130 TAGACGGTCCACTTAATATTACATAA
2340 ATTGCGCTTA
Statistics
Matches: 139, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
177 7 0.05
178 132 0.95
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.35
Consensus pattern (178 bp):
AGATGATTCAAGTGTCTATTAAAAGATTGTTCCACGATCTACAACTTTCATGAAGGACTCGAAAA
CTAAATTTAATGTTTCAAGTATAAAAAATACTTCCAAAAAATTTGTTGTTTCAGTTAACGGAAAT
AGACGGTCCACTTAATATTACATAACTTTTGCTTCAGTTGTCTAATTG
Found at i:5962 original size:32 final size:32
Alignment explanation
Indices: 5917--5981 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
5907 TCCAAACAAA
5917 ATCCAATACGACTGAGTAAACATGGTGGAGTG
1 ATCCAATACGACTGAGTAAACATGGTGGAGTG
* * *
5949 ATCCAGTATGACTGAGTAAATATGGTGGAGTG
1 ATCCAATACGACTGAGTAAACATGGTGGAGTG
5981 A
1 A
5982 GCAAACTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (32 bp):
ATCCAATACGACTGAGTAAACATGGTGGAGTG
Found at i:6432 original size:2 final size:2
Alignment explanation
Indices: 6425--6453 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
6415 TTGAAGCAAA
6425 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
6454 TATATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:14449 original size:25 final size:25
Alignment explanation
Indices: 14416--14465 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
14406 CCCAAACAAT
14416 TTTGAGCACTCTCACTCGGTCTCTA
1 TTTGAGCACTCTCACTCGGTCTCTA
*
14441 TTTGAGCACTCTCGCTCGGTCTCTA
1 TTTGAGCACTCTCACTCGGTCTCTA
14466 CAAACCAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.14, C:0.32, G:0.18, T:0.36
Consensus pattern (25 bp):
TTTGAGCACTCTCACTCGGTCTCTA
Found at i:17005 original size:29 final size:30
Alignment explanation
Indices: 16969--17040 Score: 101
Period size: 29 Copynumber: 2.4 Consensus size: 30
16959 TAAGCAAATA
*
16969 GACAATTTGCACCCTAGATTTTAATTT-TG
1 GACAATTTGCACCCTAGATTATAATTTATG
* *
16998 GACAATTTACACTCTAGATTATAATTTATG
1 GACAATTTGCACCCTAGATTATAATTTATG
*
17028 GACAATATGCACC
1 GACAATTTGCACC
17041 ACAATTGGAT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 24 0.67
30 12 0.33
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.36
Consensus pattern (30 bp):
GACAATTTGCACCCTAGATTATAATTTATG
Found at i:19263 original size:2 final size:2
Alignment explanation
Indices: 19256--19295 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
19246 AAGAACAATG
19256 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
19296 TGTATTAGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26370 original size:4 final size:4
Alignment explanation
Indices: 26361--26414 Score: 108
Period size: 4 Copynumber: 13.5 Consensus size: 4
26351 TAGATAAACT
26361 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
26409 TACA TA
1 TACA TA
26415 TAGCAACAAG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 50 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
TACA
Found at i:26597 original size:18 final size:19
Alignment explanation
Indices: 26560--26602 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
26550 GTTAAGATGT
*
26560 GCTACATTACAAATTAAAAA
1 GCTA-ATTACAAAGTAAAAA
26580 GCTAATTAC-AAGTAAAAA
1 GCTAATTACAAAGTAAAAA
*
26598 ACTAA
1 GCTAA
26603 GGACCATTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 12 0.57
19 5 0.24
20 4 0.19
ACGTcount: A:0.56, C:0.14, G:0.07, T:0.23
Consensus pattern (19 bp):
GCTAATTACAAAGTAAAAA
Found at i:26597 original size:19 final size:19
Alignment explanation
Indices: 26560--26602 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
26550 GTTAAGATGT
*
26560 GCTACATTACAAATTAAAAA
1 GCTA-ATTACAAATAAAAAA
*
26580 GCTAATTACAAGTAAAAAA
1 GCTAATTACAAATAAAAAA
26599 -CTAA
1 GCTAA
26603 GGACCATTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 4 0.19
19 13 0.62
20 4 0.19
ACGTcount: A:0.56, C:0.14, G:0.07, T:0.23
Consensus pattern (19 bp):
GCTAATTACAAATAAAAAA
Found at i:26848 original size:12 final size:12
Alignment explanation
Indices: 26833--26862 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26823 GTTCATGATT
26833 ATCTTCATCCTC
1 ATCTTCATCCTC
26845 ATCTTCATCCTC
1 ATCTTCATCCTC
*
26857 TTCTTC
1 ATCTTC
26863 CTCTAATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.40, G:0.00, T:0.47
Consensus pattern (12 bp):
ATCTTCATCCTC
Found at i:28689 original size:180 final size:180
Alignment explanation
Indices: 28382--28730 Score: 520
Period size: 180 Copynumber: 1.9 Consensus size: 180
28372 TGTTAAATGT
*
28382 AAATAAAGCACATTTGATATGAAAGTCCATTCCACAAGAGCAATGATAAAGGAACCCATCACCAC
1 AAATAAAGCACATTTGATATGAAAGTCCAATCCACAAGAGCAATGATAAAGGAACCCATCACCAC
* ** * *
28447 TTTTGTCACAAAAATCGCATGACCAGCCTCCAGAAGGGTAAGGATTATTTTGCAGAAGAACAAGA
66 TTTTGTCACAAAAATCGCATCACCAGCCTCCAGAAGGGTAAGGAGAATTTCGCAGAAGAACAAAA
* *
28512 GGATGGTTGGGATGAAAAGGATGATTAATCTCCAAGGGAATGTTAGATAA
131 GGATGATTGGGATGAAAAGGATGACTAATCTCCAAGGGAATGTTAGATAA
* *
28562 AAATAACGCACATTTGATATGAAAGTCCAATCCACAAGAGCAATGATAAAGGAACCTATCACCAC
1 AAATAAAGCACATTTGATATGAAAGTCCAATCCACAAGAGCAATGATAAAGGAACCCATCACCAC
* * * *
28627 TTTTGTCACAGAAATCGCATCCCCAGCCTCCGGAAGGGTAAGGAGAATTTCGTA-ATAGAACAAA
66 TTTTGTCACAAAAATCGCATCACCAGCCTCCAGAAGGGTAAGGAGAATTTCGCAGA-AGAACAAA
* * * *
28691 AGGATGATTGGGATGATAAGGGTGACTAATTTCTAAGGGA
130 AGGATGATTGGGATGAAAAGGATGACTAATCTCCAAGGGA
28731 GTGTCAGCAC
Statistics
Matches: 150, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
179 1 0.01
180 149 0.99
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (180 bp):
AAATAAAGCACATTTGATATGAAAGTCCAATCCACAAGAGCAATGATAAAGGAACCCATCACCAC
TTTTGTCACAAAAATCGCATCACCAGCCTCCAGAAGGGTAAGGAGAATTTCGCAGAAGAACAAAA
GGATGATTGGGATGAAAAGGATGACTAATCTCCAAGGGAATGTTAGATAA
Found at i:31971 original size:33 final size:36
Alignment explanation
Indices: 31885--31972 Score: 103
Period size: 33 Copynumber: 2.5 Consensus size: 36
31875 TAATTCAATG
*
31885 TGACAACTTCTGGTGTCAATTGAGAAAATAAAATTA
1 TGACAACTTCTGGTGTCAAATGAGAAAATAAAATTA
* * *
31921 TGACAACTTCAT-ATGTCAAATG-G-AAAT-TAGTTA
1 TGACAACTTC-TGGTGTCAAATGAGAAAATAAAATTA
31954 TGACAACTTCTGGTGTCAA
1 TGACAACTTCTGGTGTCAA
31973 TTGCAAGACC
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
32 1 0.02
33 20 0.44
34 4 0.09
35 1 0.02
36 18 0.40
37 1 0.02
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.32
Consensus pattern (36 bp):
TGACAACTTCTGGTGTCAAATGAGAAAATAAAATTA
Found at i:31989 original size:30 final size:30
Alignment explanation
Indices: 31953--32348 Score: 504
Period size: 30 Copynumber: 12.7 Consensus size: 30
31943 GAAATTAGTT
*
31953 ATGACAACTTCTGGTGTCAATTGCAAGACC
1 ATGACAACTTCTGGTGTCAATTGCAAGATC
31983 ATGACAACTTCTGGTGTCAATTGCAAGATC
1 ATGACAACTTCTGGTGTCAATTGCAAGATC
32013 ATGACAACTTCTGGTGTCAATTGCAAGATC
1 ATGACAACTTCTGGTGTCAATTGCAAGATC
* *
32043 ATGACAACTTATGGTGTCAATTGCAAAATC
1 ATGACAACTTCTGGTGTCAATTGCAAGATC
* *
32073 ATGACAACTTATGGCTTCTGGTGTCATTTGCAAGAGC
1 ATGAC-A---A---CTTCTGGTGTCAATTGCAAGATC
* *
32110 ATGACAACTTCTGGTGTCATTTGCAAGAGC
1 ATGACAACTTCTGGTGTCAATTGCAAGATC
* *
32140 ATGACAACTTCTGGTGTCATTTGCAAGACC
1 ATGACAACTTCTGGTGTCAATTGCAAGATC
* *
32170 ATGACAACTTCTGGTGTCATTTGCAAAATC
1 ATGACAACTTCTGGTGTCAATTGCAAGATC
*
32200 ATGACAACTTATGGCTTCCGGTGTCAATTGCAAAATC
1 ATGACAAC-T-T--C-T--GGTGTCAATTGCAAGATC
** *
32237 ATGACAGTTTCTGGTGTCAATTGCAACATC
1 ATGACAACTTCTGGTGTCAATTGCAAGATC
*
32267 ATGACAGCTTCTGGTGTCAATTGCAAGATC
1 ATGACAACTTCTGGTGTCAATTGCAAGATC
*
32297 ATGACAACTTCTGGTGTCAATTGCAAGACC
1 ATGACAACTTCTGGTGTCAATTGCAAGATC
*
32327 ATGACAACTTCTGGTGTTAATT
1 ATGACAACTTCTGGTGTCAATT
32349 AAAGAGTAAA
Statistics
Matches: 333, Mismatches: 19, Indels: 28
0.88 0.05 0.07
Matches are distributed among these distances:
30 274 0.82
31 2 0.01
32 2 0.01
33 2 0.01
34 2 0.01
35 2 0.01
36 2 0.01
37 47 0.14
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (30 bp):
ATGACAACTTCTGGTGTCAATTGCAAGATC
Found at i:32113 original size:127 final size:127
Alignment explanation
Indices: 31960--32336 Score: 601
Period size: 127 Copynumber: 3.0 Consensus size: 127
31950 GTTATGACAA
31960 CTTCTGGTGTCAATTGCAAGACCATGACAACTTCTGGTGTCAATTGCAAGATCATGACAACTTCT
1 CTTCTGGTGTCAATTGCAAGACCATGACAACTTCTGGTGTCAATTGCAAGATCATGACAACTTCT
*
32025 GGTGTCAATTGCAAGATCATGACAACTTATGGTGTCAATTGCAAAATCATGACAACTTATGG
66 GGTGTCAATTGCAAGATCATGACAACTTCTGGTGTCAATTGCAAAATCATGACAACTTATGG
* * * *
32087 CTTCTGGTGTCATTTGCAAGAGCATGACAACTTCTGGTGTCATTTGCAAGAGCATGACAACTTCT
1 CTTCTGGTGTCAATTGCAAGACCATGACAACTTCTGGTGTCAATTGCAAGATCATGACAACTTCT
* * *
32152 GGTGTCATTTGCAAGACCATGACAACTTCTGGTGTCATTTGCAAAATCATGACAACTTATGG
66 GGTGTCAATTGCAAGATCATGACAACTTCTGGTGTCAATTGCAAAATCATGACAACTTATGG
* * * ** * *
32214 CTTCCGGTGTCAATTGCAAAATCATGACAGTTTCTGGTGTCAATTGCAACATCATGACAGCTTCT
1 CTTCTGGTGTCAATTGCAAGACCATGACAACTTCTGGTGTCAATTGCAAGATCATGACAACTTCT
* *
32279 GGTGTCAATTGCAAGATCATGACAACTTCTGGTGTCAATTGCAAGACCATGACAACTT
66 GGTGTCAATTGCAAGATCATGACAACTTCTGGTGTCAATTGCAAAATCATGACAACTT
32337 CTGGTGTTAA
Statistics
Matches: 227, Mismatches: 23, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
127 227 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (127 bp):
CTTCTGGTGTCAATTGCAAGACCATGACAACTTCTGGTGTCAATTGCAAGATCATGACAACTTCT
GGTGTCAATTGCAAGATCATGACAACTTCTGGTGTCAATTGCAAAATCATGACAACTTATGG
Found at i:33989 original size:32 final size:31
Alignment explanation
Indices: 33952--34020 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
33942 GCCAAATTAC
* *
33952 CAATTTGAGTCTAAACATTTTCAAAAGTTGCT
1 CAATTTGAGACTAAACA-TTTCAAAAATTGCT
33984 CAATTTGAGACTAAACATTTCAAAAATTGCT
1 CAATTTGAGACTAAACATTTCAAAAATTGCT
34015 CAATTT
1 CAATTT
34021 AAAGCCTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
31 19 0.54
32 16 0.46
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (31 bp):
CAATTTGAGACTAAACATTTCAAAAATTGCT
Found at i:34870 original size:104 final size:106
Alignment explanation
Indices: 34691--34948 Score: 387
Period size: 106 Copynumber: 2.5 Consensus size: 106
34681 TTTTCTAACT
* ** * *
34691 CTTAAAATAAAATTTTAATTTTAATTTGGGCTAAATTTAGTG-AATTAGTTATATATTTTATTTT
1 CTTAAAATAAAAATAAAATTTTAATTTGGGCTAAACTTAGTGAAATTAGTTATATATTTTATTTC
* *
34755 TAAAATCCTATAACAAT-A-TTATTAATTATGGAATTTACC
66 TAAAACCCTATAACAATAAGTTATTAATTATGAAATTTACC
* * *
34794 CTTAAAATAAAAATAAAAATTTAATTTGGGCTAAACTTAGTGAAATTAGTTTTGTATTTTATTTC
1 CTTAAAATAAAAATAAAATTTTAATTTGGGCTAAACTTAGTGAAATTAGTTATATATTTTATTTC
*
34859 TAAAACCCTATAACAATAAGTTATTAATTTTGAAATTTACC
66 TAAAACCCTATAACAATAAGTTATTAATTATGAAATTTACC
34900 CTTAAAATAAAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATTA
1 CTTAAAATAAAAATAAAATTTTAATTT-GGGCTAAACTTAGTGAAATTA
34949 AGACTAAACT
Statistics
Matches: 139, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
103 37 0.27
104 35 0.25
105 1 0.01
106 45 0.32
107 21 0.15
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (106 bp):
CTTAAAATAAAAATAAAATTTTAATTTGGGCTAAACTTAGTGAAATTAGTTATATATTTTATTTC
TAAAACCCTATAACAATAAGTTATTAATTATGAAATTTACC
Found at i:38040 original size:24 final size:22
Alignment explanation
Indices: 38002--38051 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 22
37992 AAAGTTAGCA
38002 TCTT-TTCCTCTGTTTCT-TCTT
1 TCTTCTTCCTCTGTTTCTAT-TT
38023 TCTTCTTCCTTCTCGTTTCTATTT
1 TCTTCTTCC-TCT-GTTTCTATTT
38047 TCTTC
1 TCTTC
38052 CCCATTCCCC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
21 4 0.16
22 4 0.16
23 3 0.12
24 13 0.52
25 1 0.04
ACGTcount: A:0.02, C:0.30, G:0.04, T:0.64
Consensus pattern (22 bp):
TCTTCTTCCTCTGTTTCTATTT
Found at i:49005 original size:19 final size:19
Alignment explanation
Indices: 48983--49020 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
48973 TTTGGTATAT
*
48983 ATATATAATAATAATATTA
1 ATATATAATAATAAGATTA
49002 ATATATAATAATAAGATTA
1 ATATATAATAATAAGATTA
49021 CATAAATAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (19 bp):
ATATATAATAATAAGATTA
Found at i:51729 original size:22 final size:22
Alignment explanation
Indices: 51701--51746 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
51691 TTTTGCTTTT
51701 GAGTTTAGCATGAAGGAAAGGA
1 GAGTTTAGCATGAAGGAAAGGA
51723 GAGTTTAGCATGAAGGAAAGGA
1 GAGTTTAGCATGAAGGAAAGGA
51745 GA
1 GA
51747 TGTTGGTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.04, G:0.37, T:0.17
Consensus pattern (22 bp):
GAGTTTAGCATGAAGGAAAGGA
Found at i:52741 original size:68 final size:68
Alignment explanation
Indices: 52626--52794 Score: 207
Period size: 68 Copynumber: 2.5 Consensus size: 68
52616 CCTAGATCTC
* * * * * *
52626 CCCCTAGATTTAATCCTAAAT-AGCAGAAAAAAAAACCTCATATTTTATTTTTTATTTCTC-TCT
1 CCCCTAGATTTAATCC-CACTCACCAAAAAAAAAAAACTCAGATTTTATTTTTTATTTCTCTTCT
52689 TCCT
65 TCCT
** **
52693 CCCCTATTTTTAATCTTACTCACCCAAAAAAAAAAAACTCAGATTTTATTTTTTATTTCTCTTCT
1 CCCCTAGATTTAATCCCACTCA-CCAAAAAAAAAAAACTCAGATTTTATTTTTTATTTCTCTTCT
52758 TCCT
65 TCCT
*
52762 CCCCTAGATTTAATCCCACTTACCAAAAAAAAA
1 CCCCTAGATTTAATCCCACTCACCAAAAAAAAA
52795 CTCCAAATTT
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
66 2 0.02
67 14 0.16
68 45 0.53
69 24 0.28
ACGTcount: A:0.34, C:0.25, G:0.03, T:0.38
Consensus pattern (68 bp):
CCCCTAGATTTAATCCCACTCACCAAAAAAAAAAAACTCAGATTTTATTTTTTATTTCTCTTCTT
CCT
Found at i:62353 original size:177 final size:177
Alignment explanation
Indices: 62050--62398 Score: 653
Period size: 177 Copynumber: 2.0 Consensus size: 177
62040 CATGCAAACA
62050 ATCAAACAATAAAAGTCTTCACTTTTTGCGAATTCCATGCATTAGTCAAAGCATTTCTTATGGAT
1 ATCAAACAATAAAAGTCTTCACTTTTTGCGAATTCCATGCATTAGTCAAAGCATTTCTTATGGAT
62115 CACATGCATCAATCACAACACTCACACGCTCTAATAAGGTTTTCATTATGCATCAAAGCATTTAA
66 CACATGCATCAATCACAACACTCACACGCTCTAATAAGGTTTTCATTATGCATCAAAGCATTTAA
62180 CATTCCACAAGCATTTTAGTTCCAGCATAGCATGTATTCTAGCATGT
131 CATTCCACAAGCATTTTAGTTCCAGCATAGCATGTATTCTAGCATGT
* * *
62227 ATCAAACAATAACAGTCTTCACTTTTTGCGGATTCCATGCATTAGTCAAAGCATTTTTTATGGAT
1 ATCAAACAATAAAAGTCTTCACTTTTTGCGAATTCCATGCATTAGTCAAAGCATTTCTTATGGAT
* *
62292 CACATGCATCAATCACAGCACTCACACGCTCTAATAAGGTTTTCATTATGCATCGAAGCATTTAA
66 CACATGCATCAATCACAACACTCACACGCTCTAATAAGGTTTTCATTATGCATCAAAGCATTTAA
62357 CATTCCACAAGCATTTTAGTTCCAGCATAGCATGTATTCTAG
131 CATTCCACAAGCATTTTAGTTCCAGCATAGCATGTATTCTAG
62399 ATTTAGAATA
Statistics
Matches: 167, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
177 167 1.00
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (177 bp):
ATCAAACAATAAAAGTCTTCACTTTTTGCGAATTCCATGCATTAGTCAAAGCATTTCTTATGGAT
CACATGCATCAATCACAACACTCACACGCTCTAATAAGGTTTTCATTATGCATCAAAGCATTTAA
CATTCCACAAGCATTTTAGTTCCAGCATAGCATGTATTCTAGCATGT
Found at i:62909 original size:45 final size:45
Alignment explanation
Indices: 62845--62935 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
62835 TTGTTAAACC
62845 TTAATTGGACTTAAACTTCAAGTCTTACAAGCTCTATTGATCCAA
1 TTAATTGGACTTAAACTTCAAGTCTTACAAGCTCTATTGATCCAA
62890 TTAATTGGACTTAAACTTCAAGTCTTACAAGCTCTATTGATCCAA
1 TTAATTGGACTTAAACTTCAAGTCTTACAAGCTCTATTGATCCAA
62935 T
1 T
62936 GTGCCATATG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (45 bp):
TTAATTGGACTTAAACTTCAAGTCTTACAAGCTCTATTGATCCAA
Found at i:64853 original size:76 final size:76
Alignment explanation
Indices: 64714--64854 Score: 194
Period size: 76 Copynumber: 1.9 Consensus size: 76
64704 GGACAAGGGC
* * *
64714 CCCGACTCCTCCTGGGCGCCCGCATGGTTGCCTTGAGCACCCATGTGATTTGCCTAAAGACCCAG
1 CCCGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGATTTGCCTAAACACCCAG
64779 CTGGGCAGTGT
66 CTGGGCAGTGT
* * * * *
64790 CCCGACTCCACCTGGGTGCCCACATGGTTTGTC-TGAGGACCCATGTGATTTGCCTGATCACCCA
1 CCCGACTCCACCTGGGCGCCCACATGG-TTGCCTTGAGCACCCATGTGATTTGCCTAAACACCCA
64854 G
65 G
64855 GTAGGCTGTG
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
76 52 0.93
77 4 0.07
ACGTcount: A:0.16, C:0.34, G:0.26, T:0.23
Consensus pattern (76 bp):
CCCGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGATTTGCCTAAACACCCAG
CTGGGCAGTGT
Found at i:66286 original size:25 final size:26
Alignment explanation
Indices: 66214--66287 Score: 91
Period size: 26 Copynumber: 2.9 Consensus size: 26
66204 TTTAATTTCT
*
66214 TTTATG-TTATGGGC-TTCTATTTTTG
1 TTTATGCTT-TGGGCTTTCAATTTTTG
* *
66239 TTTGTGCTTTGGGTTTTCAATTTTTG
1 TTTATGCTTTGGGCTTTCAATTTTTG
66265 TTTATGCTTTGGGCTTTC-ATTTT
1 TTTATGCTTTGGGCTTTCAATTTT
66288 AATTTGACAT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 14 0.33
26 28 0.67
ACGTcount: A:0.09, C:0.09, G:0.20, T:0.61
Consensus pattern (26 bp):
TTTATGCTTTGGGCTTTCAATTTTTG
Found at i:67069 original size:47 final size:47
Alignment explanation
Indices: 67000--67470 Score: 597
Period size: 47 Copynumber: 10.0 Consensus size: 47
66990 ACTTGTTTTT
* * *
67000 TTTTCCAAAAATGCCCTTCCCGGTCGGAAGGTGTCAGTTTTCATTAC
1 TTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTAC
* *
67047 TTTTCCCAGAATGCCCTTCCCGGTCGGAAGGTGCCAATTTTCCTTAC
1 TTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTAC
* *
67094 TTGTT-AC-AAATGCCCTTCCCGATC-GAAGGTGCCAGTTTTCCTTAC
1 TT-TTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTAC
* *
67139 TTTTCCCAAAATGCTCTTCCCGGTCGGAAGGTGCCAGTTTTCCTCAC
1 TTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTAC
* * *
67186 TTTTCCCAAAATGTCATTCCCGGTCGGAAGGTGCCAGTTTTCCTTCAT
1 TTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTT-AC
* *
67234 TTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGTCAGTTTTCTTTAC
1 TTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTAC
* * * * * *
67281 TTTGCTCAGAATGCCCTTCCCGGACGGAAGGTGCCAGTCTTCCTTCAT
1 TTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTT-AC
* * * * *
67329 TTTTTCCAAAATGCCCTTCCCGGTTGGAAGGTGTCGGTTTTCTTTAC
1 TTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTAC
* *
67376 TTTTCCCCGAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTCAT
1 TTTT-CCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTT-AC
* * *
67425 TTTTCCCTAAATGCCCTTCCCAGTCGGAAGGTGCCAGATTTGCCTT
1 TTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAG-TTTTCCTT
67471 TACATTTGAG
Statistics
Matches: 363, Mismatches: 52, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
44 2 0.01
45 23 0.06
46 30 0.08
47 150 0.41
48 146 0.40
49 12 0.03
ACGTcount: A:0.17, C:0.29, G:0.20, T:0.34
Consensus pattern (47 bp):
TTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTAC
Found at i:67257 original size:48 final size:48
Alignment explanation
Indices: 66999--67470 Score: 566
Period size: 48 Copynumber: 10.0 Consensus size: 48
66989 TACTTGTTTT
* * *
66999 TTTTTCCAAAAATGCCCTTCCCGGTCGGAAGGTGTCAGTTTTCATT-A
1 TTTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTCA
* * *
67046 CTTTTCCCAGAATGCCCTTCCCGGTCGGAAGGTGCCAATTTTCCTT-A
1 TTTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTCA
* * *
67093 CTTGTT-AC-AAATGCCCTTCCCGATC-GAAGGTGCCAGTTTTCCTT-A
1 -TTTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTCA
* *
67138 CTTTTCCCAAAATGCTCTTCCCGGTCGGAAGGTGCCAGTTTTCC-TCA
1 TTTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTCA
* * *
67185 CTTTTCCCAAAATGTCATTCCCGGTCGGAAGGTGCCAGTTTTCCTTCA
1 TTTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTCA
* *
67233 TTTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGTCAGTTTT-CTTTA
1 TTTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTCA
* * * * * *
67280 CTTTGCTCAGAATGCCCTTCCCGGACGGAAGGTGCCAGTCTTCCTTCA
1 TTTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTCA
* * * * *
67328 TTTTTTCCAAAATGCCCTTCCCGGTTGGAAGGTGTCGGTTTT-CTTTA
1 TTTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTCA
* *
67375 CTTTTCCCCGAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTCA
1 -TTTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTCA
* * *
67424 TTTTTCCCTAAATGCCCTTCCCAGTCGGAAGGTGCCAGATTTGCCTT
1 TTTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAG-TTTTCCTT
67471 TACATTTGAG
Statistics
Matches: 360, Mismatches: 55, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
44 3 0.01
45 20 0.06
46 31 0.09
47 144 0.40
48 151 0.42
49 11 0.03
ACGTcount: A:0.17, C:0.29, G:0.20, T:0.34
Consensus pattern (48 bp):
TTTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTCA
Found at i:67262 original size:95 final size:95
Alignment explanation
Indices: 67000--67470 Score: 619
Period size: 95 Copynumber: 5.0 Consensus size: 95
66990 ACTTGTTTTT
* * * * *
67000 TTTTCCAAAAATGCCCTTCCCGGTCGGAAGGTGTCAGTTTTCATT-ACTTTTCCCAGAATGCCCT
1 TTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTCATTTTTCCCAAAATGCCCT
*
67064 TCCCGGTCGGAAGGTGCCAATTTTCCTTAC
66 TCCCGGTCGGAAGGTGCCAGTTTTCCTTAC
* * * *
67094 TTGTT-AC-AAATGCCCTTCCCGATC-GAAGGTGCCAGTTTTCCTT-ACTTTTCCCAAAATGCTC
1 TT-TTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTCATTTTTCCCAAAATGCCC
*
67155 TTCCCGGTCGGAAGGTGCCAGTTTTCCTCAC
65 TTCCCGGTCGGAAGGTGCCAGTTTTCCTTAC
* *
67186 TTTTCCCAAAATGTCATTCCCGGTCGGAAGGTGCCAGTTTTCCTTCATTTTTCCCAAAATGCCCT
1 TTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTCATTTTTCCCAAAATGCCCT
* *
67251 TCCCGGTCGGAAGGTGTCAGTTTTCTTTAC
66 TCCCGGTCGGAAGGTGCCAGTTTTCCTTAC
* * * * * *
67281 TTTGCTCAGAATGCCCTTCCCGGACGGAAGGTGCCAGTCTTCCTTCATTTTTTCCAAAATGCCCT
1 TTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTCATTTTTCCCAAAATGCCCT
* * * *
67346 TCCCGGTTGGAAGGTGTCGGTTTTCTTTAC
66 TCCCGGTCGGAAGGTGCCAGTTTTCCTTAC
* *
67376 TTTTCCCCGAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTCATTTTTCCCTAAATGCCC
1 TTTT-CCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTCATTTTTCCCAAAATGCCC
* *
67441 TTCCCAGTCGGAAGGTGCCAGATTTGCCTT
65 TTCCCGGTCGGAAGGTGCCAG-TTTTCCTT
67471 TACATTTGAG
Statistics
Matches: 328, Mismatches: 42, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
91 2 0.01
92 65 0.20
93 30 0.09
94 21 0.06
95 134 0.41
96 70 0.21
97 6 0.02
ACGTcount: A:0.17, C:0.29, G:0.20, T:0.34
Consensus pattern (95 bp):
TTTTCCCAAAATGCCCTTCCCGGTCGGAAGGTGCCAGTTTTCCTTCATTTTTCCCAAAATGCCCT
TCCCGGTCGGAAGGTGCCAGTTTTCCTTAC
Found at i:74614 original size:11 final size:11
Alignment explanation
Indices: 74591--74630 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
74581 TTAAGATAAT
74591 TCTTCAA-TAA
1 TCTTCAATTAA
*
74601 TCTTCAATTTA
1 TCTTCAATTAA
*
74612 TCTTCAATAAA
1 TCTTCAATTAA
74623 TCTTCAAT
1 TCTTCAAT
74631 CACGATCTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
10 7 0.27
11 19 0.73
ACGTcount: A:0.35, C:0.20, G:0.00, T:0.45
Consensus pattern (11 bp):
TCTTCAATTAA
Found at i:75826 original size:2 final size:2
Alignment explanation
Indices: 75819--75852 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
75809 CAATCACTTA
75819 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75853 GTGTGTGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75857 original size:2 final size:2
Alignment explanation
Indices: 75852--75892 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
75842 TATATATATA
75852 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
75893 AAATTTTCAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:76518 original size:21 final size:21
Alignment explanation
Indices: 76470--76522 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
76460 CTTTGAATGG
** *
76470 TGATGGCACGGGCATGGCCGG
1 TGATGGCACGGGCATAACCGA
* *
76491 TGGTGGCACGGGCTTAACCGA
1 TGATGGCACGGGCATAACCGA
76512 TGATGGCACGG
1 TGATGGCACGG
76523 TGATGGCCAG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.17, C:0.23, G:0.43, T:0.17
Consensus pattern (21 bp):
TGATGGCACGGGCATAACCGA
Found at i:79602 original size:27 final size:28
Alignment explanation
Indices: 79572--79628 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
79562 ATTTTCTTTT
79572 AAATTA-AAAAAACGCAGAAACAAAAAA
1 AAATTAGAAAAAACGCAGAAACAAAAAA
* *
79599 AAATTAGAATAAACGCAGAAACAAGAAA
1 AAATTAGAAAAAACGCAGAAACAAAAAA
79627 AA
1 AA
79629 TATTTTTAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 6 0.22
28 21 0.78
ACGTcount: A:0.70, C:0.11, G:0.11, T:0.09
Consensus pattern (28 bp):
AAATTAGAAAAAACGCAGAAACAAAAAA
Found at i:86242 original size:21 final size:22
Alignment explanation
Indices: 86208--86249 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
86198 TAAATTATAA
86208 CAACCCCTAATTAACCCAAAGC
1 CAACCCCTAATTAACCCAAAGC
*
86230 CAACCCC-AATTAAGCCAAAG
1 CAACCCCTAATTAACCCAAAG
86250 ACGTAAAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.43, C:0.38, G:0.07, T:0.12
Consensus pattern (22 bp):
CAACCCCTAATTAACCCAAAGC
Found at i:86435 original size:20 final size:20
Alignment explanation
Indices: 86407--86445 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
86397 TTACACTTTC
*
86407 ATTTCTATGTATTTAGTATA
1 ATTTATATGTATTTAGTATA
86427 ATTTATATGTATTTAGTAT
1 ATTTATATGTATTTAGTAT
86446 GTTTTTAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.03, G:0.10, T:0.56
Consensus pattern (20 bp):
ATTTATATGTATTTAGTATA
Found at i:86452 original size:11 final size:11
Alignment explanation
Indices: 86412--86456 Score: 58
Period size: 11 Copynumber: 4.3 Consensus size: 11
86402 CTTTCATTTC
86412 TATGTATTTAG
1 TATGTATTTAG
*
86423 TAT-AATTTA-
1 TATGTATTTAG
86432 TATGTATTTAG
1 TATGTATTTAG
*
86443 TATGTTTTTAG
1 TATGTATTTAG
86454 TAT
1 TAT
86457 AATTTCATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
9 3 0.10
10 10 0.34
11 16 0.55
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (11 bp):
TATGTATTTAG
Found at i:106658 original size:35 final size:35
Alignment explanation
Indices: 106559--107298 Score: 734
Period size: 35 Copynumber: 21.3 Consensus size: 35
106549 TCATTCTGGC
* * * * *
106559 ATAAACTGGAGAAAGACCACCATGGGTCAACTGAA
1 ATAAACTGAAGAAAGATCGCCCTGGATCAACTGAA
* * * * * *
106594 ATAAACCGAA-AAAAACCACCATGGATCAACCGAA
1 ATAAACTGAAGAAAGATCGCCCTGGATCAACTGAA
106628 ATAAACTGAAGAAAGATCGCCCTGGATCAACTGAA
1 ATAAACTGAAGAAAGATCGCCCTGGATCAACTGAA
* * * *
106663 ATAAACTGAAGAAAGACCACTCTGGGTCAACTGAA
1 ATAAACTGAAGAAAGATCGCCCTGGATCAACTGAA
* * *
106698 ATAAACTGAAGAAAAGATCGCCTTGGATCAATTGGA
1 ATAAACTGAAG-AAAGATCGCCCTGGATCAACTGAA
*
106734 ATAAACTAAAGAAAGATCG--C-----CAACTGAA
1 ATAAACTGAAGAAAGATCGCCCTGGATCAACTGAA
* * * *
106762 ATAAACTTAGGAAAGACCGCCCTGGGTCAACTGAA
1 ATAAACTGAAGAAAGATCGCCCTGGATCAACTGAA
106797 ATAAACTGAAGAAAAGATCGCCCTGGATCAACT-AGA
1 ATAAACTGAAG-AAAGATCGCCCTGGATCAACTGA-A
* *
106833 ATAAACTAAAGAAAGATCGCCCTGGATCAACTAAA
1 ATAAACTGAAGAAAGATCGCCCTGGATCAACTGAA
* ** *
106868 ATAAACTG-AGTAAAGACCATCCTGGGTCAACTGAA
1 ATAAACTGAAG-AAAGATCGCCCTGGATCAACTGAA
* * * *
106903 ATAAATTGAAAAAAAGATCACCCTGGATCAATTGGAA
1 ATAAACTG-AAGAAAGATCGCCCTGGATCAACT-GAA
* * *
106940 A-AAACTAAAGAAAAATCGCCCTAGATCAACT-AGA
1 ATAAACTGAAGAAAGATCGCCCTGGATCAACTGA-A
*
106974 ATAAACTAAAGAAAGATCGCCCTGGATCAACTGAA
1 ATAAACTGAAGAAAGATCGCCCTGGATCAACTGAA
* * * * *
107009 GTAAACTGAGGAAAGACCGCCCTGGGTCAATTGAA
1 ATAAACTGAAGAAAGATCGCCCTGGATCAACTGAA
* *
107044 ATAAACTGAAGAAAGATCGCCCTAGATCAACCGAA
1 ATAAACTGAAGAAAGATCGCCCTGGATCAACTGAA
* *
107079 ATAAACTGAAGAAAGATCGCCTTGGGTCAACTGAA
1 ATAAACTGAAGAAAGATCGCCCTGGATCAACTGAA
*
107114 ATAAACTGAATAAAGATCGCCCTAGG-TCAACTGAA
1 ATAAACTGAAGAAAGATCGCCCT-GGATCAACTGAA
*
107149 ATAAACTAAAGAAAGATCGCCCTGGATCAACTGAA
1 ATAAACTGAAGAAAGATCGCCCTGGATCAACTGAA
* * * *
107184 ATAAACTTAAGAAAGACCGCCATGGGTCAACTGAA
1 ATAAACTGAAGAAAGATCGCCCTGGATCAACTGAA
* * * * * *
107219 AT-AACTGAAGAACGACCACCCTAGATCATTCTGAC
1 ATAAACTGAAGAAAGATCGCCCTGGATCA-ACTGAA
* * * * *
107254 ATAAACTAAAGAAAGACCACCCTGGGTCATCTGAA
1 ATAAACTGAAGAAAGATCGCCCTGGATCAACTGAA
107289 ATAAACTGAA
1 ATAAACTGAA
107299 TCTTAGGTCG
Statistics
Matches: 588, Mismatches: 94, Indels: 46
0.81 0.13 0.06
Matches are distributed among these distances:
28 22 0.04
30 1 0.00
33 1 0.00
34 56 0.10
35 399 0.68
36 104 0.18
37 5 0.01
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.17
Consensus pattern (35 bp):
ATAAACTGAAGAAAGATCGCCCTGGATCAACTGAA
Found at i:107067 original size:105 final size:106
Alignment explanation
Indices: 106559--107298 Score: 814
Period size: 105 Copynumber: 7.1 Consensus size: 106
106549 TCATTCTGGC
* * * * * * *
106559 ATAAACTGGAGAAAGACCACCATGGGTCAACTGAAATAAACCG-AAAAAA-ACCACCATGGATCA
1 ATAAACTGAAGAAAGACCGCCCTGGGTCAACTGAAATAAACTGAAAAAAAGATCGCCCTGGATCA
** *
106622 ACCGAAATAAACTGAAGAAAGATCGCCCTGGATCAACTGAA
66 ATTGAAATAAACTAAAGAAAGATCGCCCTGGATCAACTGAA
* * * *
106663 ATAAACTGAAGAAAGACCACTCTGGGTCAACTGAAATAAACTGAAGAAAAGATCGCCTTGGATCA
1 ATAAACTGAAGAAAGACCGCCCTGGGTCAACTGAAATAAACTGAAAAAAAGATCGCCCTGGATCA
*
106728 ATTGGAATAAACTAAAGAAAGATCG--C-----CAACTGAA
66 ATTGAAATAAACTAAAGAAAGATCGCCCTGGATCAACTGAA
* * *
106762 ATAAACTTAGGAAAGACCGCCCTGGGTCAACTGAAATAAACTGAAGAAAAGATCGCCCTGGATCA
1 ATAAACTGAAGAAAGACCGCCCTGGGTCAACTGAAATAAACTGAAAAAAAGATCGCCCTGGATCA
* *
106827 ACT-AGAATAAACTAAAGAAAGATCGCCCTGGATCAACTAAA
66 ATTGA-AATAAACTAAAGAAAGATCGCCCTGGATCAACTGAA
** * *
106868 ATAAACTG-AGTAAAGACCATCCTGGGTCAACTGAAATAAATTGAAAAAAAGATCACCCTGGATC
1 ATAAACTGAAG-AAAGACCGCCCTGGGTCAACTGAAATAAACTGAAAAAAAGATCGCCCTGGATC
* *
106932 AATTGGAAA-AAACTAAAGAAAAATCGCCCTAGATCAACT-AGA
65 AATT-GAAATAAACTAAAGAAAGATCGCCCTGGATCAACTGA-A
* * * * ** * *
106974 ATAAACTAAAGAAAGATCGCCCTGGATCAACTGAAGTAAACTG-AGGAAAGACCGCCCTGGGTCA
1 ATAAACTGAAGAAAGACCGCCCTGGGTCAACTGAAATAAACTGAAAAAAAGATCGCCCTGGATCA
* * *
107038 ATTGAAATAAACTGAAGAAAGATCGCCCTAGATCAACCGAA
66 ATTGAAATAAACTAAAGAAAGATCGCCCTGGATCAACTGAA
* * *
107079 ATAAACTGAAGAAAGATCGCCTTGGGTCAACTGAAATAAACTG-AATAAAGATCGCCCTAGG-TC
1 ATAAACTGAAGAAAGACCGCCCTGGGTCAACTGAAATAAACTGAAAAAAAGATCGCCCT-GGATC
*
107142 AACTGAAATAAACTAAAGAAAGATCGCCCTGGATCAACTGAA
65 AATTGAAATAAACTAAAGAAAGATCGCCCTGGATCAACTGAA
* * * * * * *
107184 ATAAACTTAAGAAAGACCGCCATGGGTCAACTGAAAT-AACTG-AAGAACGACCACCCTAGATCA
1 ATAAACTGAAGAAAGACCGCCCTGGGTCAACTGAAATAAACTGAAAAAAAGATCGCCCTGGATCA
* * * * * *
107247 TTCTGACATAAACTAAAGAAAGACCACCCTGGGTCATCTGAA
66 AT-TGAAATAAACTAAAGAAAGATCGCCCTGGATCAACTGAA
107289 ATAAACTGAA
1 ATAAACTGAA
107299 TCTTAGGTCG
Statistics
Matches: 544, Mismatches: 72, Indels: 39
0.83 0.11 0.06
Matches are distributed among these distances:
99 90 0.17
101 1 0.00
103 1 0.00
104 63 0.12
105 222 0.41
106 162 0.30
107 4 0.01
108 1 0.00
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.17
Consensus pattern (106 bp):
ATAAACTGAAGAAAGACCGCCCTGGGTCAACTGAAATAAACTGAAAAAAAGATCGCCCTGGATCA
ATTGAAATAAACTAAAGAAAGATCGCCCTGGATCAACTGAA
Found at i:109158 original size:14 final size:15
Alignment explanation
Indices: 109128--109158 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
109118 TTGGAAATTA
109128 TTTTGAAAAATCATT
1 TTTTGAAAAATCATT
109143 TTTTGAAAAATC-TT
1 TTTTGAAAAATCATT
109157 TT
1 TT
109159 GAAAGCATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (15 bp):
TTTTGAAAAATCATT
Found at i:117368 original size:2 final size:2
Alignment explanation
Indices: 117361--117418 Score: 77
Period size: 2 Copynumber: 30.0 Consensus size: 2
117351 CGACCGATTA
*
117361 AT AT AT AT AT AT AT AT AT A- AT A- AT AT -T AT AT TT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
117400 AT AT AT AT AT CAT AT AT AT
1 AT AT AT AT AT -AT AT AT AT
117419 CTGATATTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
1 3 0.06
2 45 0.90
3 2 0.04
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:117586 original size:10 final size:10
Alignment explanation
Indices: 117571--117600 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
117561 GACCTCCGTC
117571 TCTTTCTTCT
1 TCTTTCTTCT
117581 TCTTTCTTCT
1 TCTTTCTTCT
117591 TCCTTTCTTC
1 T-CTTTCTTC
117601 ATTTTCAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 11 0.58
11 8 0.42
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (10 bp):
TCTTTCTTCT
Found at i:121069 original size:19 final size:20
Alignment explanation
Indices: 121042--121087 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
121032 GGATGGTGGC
* *
121042 TGTTAATGGC-CATTCTTTT
1 TGTTGATGGCACATTCCTTT
121061 TGTTGATGGCACATTCCTTT
1 TGTTGATGGCACATTCCTTT
121081 TGTTGAT
1 TGTTGAT
121088 AACTAATTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.15, C:0.15, G:0.20, T:0.50
Consensus pattern (20 bp):
TGTTGATGGCACATTCCTTT
Found at i:121254 original size:113 final size:112
Alignment explanation
Indices: 121050--121267 Score: 323
Period size: 113 Copynumber: 1.9 Consensus size: 112
121040 GCTGTTAATG
* ** * *
121050 GCCATTCTTTTTGTTGATGGCACATTCCTTTTGTTGATAACTAATTTGGTATTTCCTTTAAAACT
1 GCCATTCTTCTTGTAAATGGCACATTCCTTTTGTTGATAACTAATTTGGTATATCCTATAAAACT
121115 ATATTCTGCTATCATGTATGTAAAGCAGTGTAAAGGGTTAGCAATTTA
66 ATATTCTGCTATCATG-ATGTAAAGCAGTGTAAAGGGTTAGCAATTTA
*
121163 GCCATTCTTCTTGTAAATGGCACATTCTTTTTGTTGATAACTAATTTGGTATATCCTAT-AAACT
1 GCCATTCTTCTTGTAAATGGCACATTCCTTTTGTTGATAACTAATTTGGTATATCCTATAAAAC-
*
121227 ATATATTTCTGCTATCATG-TGTTAAGCAGTGTAAAGGGTTA
65 -TATA-TTCTGCTATCATGATGTAAAGCAGTGTAAAGGGTTA
121268 CCTACTTAGT
Statistics
Matches: 95, Mismatches: 7, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
112 4 0.04
113 74 0.78
114 4 0.04
115 13 0.14
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (112 bp):
GCCATTCTTCTTGTAAATGGCACATTCCTTTTGTTGATAACTAATTTGGTATATCCTATAAAACT
ATATTCTGCTATCATGATGTAAAGCAGTGTAAAGGGTTAGCAATTTA
Found at i:124320 original size:274 final size:274
Alignment explanation
Indices: 123831--124379 Score: 1089
Period size: 274 Copynumber: 2.0 Consensus size: 274
123821 GGTCTAAGAA
123831 TATCATATTTTAGGCTTCAAGACATCTGGCTTGACAATTTAGGCTTCATGGACTCAAACGGGTCT
1 TATCATATTTTAGGCTTCAAGACATCTGGCTTGACAATTTAGGCTTCATGGACTCAAACGGGTCT
123896 AATGGGCCGAAATGAGACAAAATCAATAGTTTCTCCAAATCAATACTATATATAAAGTACGAATA
66 AATGGGCCGAAATGAGACAAAATCAATAGTTTCTCCAAATCAATACTATATATAAAGTACGAATA
123961 ATTGGAAACATTATGTTTTCTGATTGAAAGCTGTTGAAACTTCTTAGAGAGAGATGCTCATCAAT
131 ATTGGAAACATTATGTTTTCTGATTGAAAGCTGTTGAAACTTCTTAGAGAGAGATGCTCATCAAT
*
124026 CAAATAGAGAAGATCGTGAGATCTATAATACAACGGACCATGAGATAAGGGCCCCGAGTTTTTTG
196 CAAATAGAGAAGATCGTGAGATCTATAATACAACGGACCATGAGATAAAGGCCCCGAGTTTTTTG
124091 TCTGTAGGGGATCC
261 TCTGTAGGGGATCC
124105 TATCATATTTTAGGCTTCAAGACATCTGGCTTGACAATTTAGGCTTCATGGACTCAAACGGGTCT
1 TATCATATTTTAGGCTTCAAGACATCTGGCTTGACAATTTAGGCTTCATGGACTCAAACGGGTCT
124170 AATGGGCCGAAATGAGACAAAATCAATAGTTTCTCCAAATCAATACTATATATAAAGTACGAATA
66 AATGGGCCGAAATGAGACAAAATCAATAGTTTCTCCAAATCAATACTATATATAAAGTACGAATA
124235 ATTGGAAACATTATGTTTTCTGATTGAAAGCTGTTGAAACTTCTTAGAGAGAGATGCTCATCAAT
131 ATTGGAAACATTATGTTTTCTGATTGAAAGCTGTTGAAACTTCTTAGAGAGAGATGCTCATCAAT
124300 CAAATAGAGAAGATCGTGAGATCTATAATACAACGGACCATGAGATAAAGGCCCCGAGTTTTTTG
196 CAAATAGAGAAGATCGTGAGATCTATAATACAACGGACCATGAGATAAAGGCCCCGAGTTTTTTG
124365 TCTGTAGGGGATCC
261 TCTGTAGGGGATCC
124379 T
1 T
124380 CTTTGATATT
Statistics
Matches: 274, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
274 274 1.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.29
Consensus pattern (274 bp):
TATCATATTTTAGGCTTCAAGACATCTGGCTTGACAATTTAGGCTTCATGGACTCAAACGGGTCT
AATGGGCCGAAATGAGACAAAATCAATAGTTTCTCCAAATCAATACTATATATAAAGTACGAATA
ATTGGAAACATTATGTTTTCTGATTGAAAGCTGTTGAAACTTCTTAGAGAGAGATGCTCATCAAT
CAAATAGAGAAGATCGTGAGATCTATAATACAACGGACCATGAGATAAAGGCCCCGAGTTTTTTG
TCTGTAGGGGATCC
Found at i:125465 original size:22 final size:22
Alignment explanation
Indices: 125385--125556 Score: 140
Period size: 22 Copynumber: 7.9 Consensus size: 22
125375 TCTCACATGG
*
125385 AGGTTATCAAAA-ATCATAGGA
1 AGGTTATCAAAATTTCATAGGA
125406 AGGTTA-CAAAATTTCATAGGA
1 AGGTTATCAAAATTTCATAGGA
* **
125427 AGGTTTATTAAAATTTCATAGTT
1 AGG-TTATCAAAATTTCATAGGA
*
125450 AGGTTATCAAAGTTTCATATGG-
1 AGGTTATCAAAATTTCATA-GGA
** * *
125472 ATTTTATCACAATTTTATAGGTA
1 AGGTTATCAAAATTTCATAGG-A
*
125495 A-ATTATCAAAATTTCATAGCG-
1 AGGTTATCAAAATTTCATAG-GA
* * *
125516 TGGTTATCAAAATTTAATATGA
1 AGGTTATCAAAATTTCATAGGA
125538 TA-GTTATCAAAATTTCATA
1 -AGGTTATCAAAATTTCATA
125557 AAAGTATTCA
Statistics
Matches: 120, Mismatches: 21, Indels: 19
0.75 0.13 0.12
Matches are distributed among these distances:
20 5 0.04
21 20 0.17
22 77 0.64
23 18 0.15
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.38
Consensus pattern (22 bp):
AGGTTATCAAAATTTCATAGGA
Found at i:132094 original size:88 final size:88
Alignment explanation
Indices: 131936--132106 Score: 324
Period size: 88 Copynumber: 1.9 Consensus size: 88
131926 AGCGTATAGG
*
131936 ATTATACACTGTTGTAAGGGAAATTGCCTTGGCAAAGTCTCTCATTCATTTTGGCCTGGTTGGAA
1 ATTAAACACTGTTGTAAGGGAAATTGCCTTGGCAAAGTCTCTCATTCATTTTGGCCTGGTTGGAA
132001 TTATAGGTCCAAACCCTAAGTGC
66 TTATAGGTCCAAACCCTAAGTGC
*
132024 ATTAAACATTGTTGTAAGGGAAATTGCCTTGGCAAAGTCTCTCATTCATTTTGGCCTGGTTGGAA
1 ATTAAACACTGTTGTAAGGGAAATTGCCTTGGCAAAGTCTCTCATTCATTTTGGCCTGGTTGGAA
132089 TTATAGGTCCAAACCCTA
66 TTATAGGTCCAAACCCTA
132107 CACTGCGGAA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
88 81 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (88 bp):
ATTAAACACTGTTGTAAGGGAAATTGCCTTGGCAAAGTCTCTCATTCATTTTGGCCTGGTTGGAA
TTATAGGTCCAAACCCTAAGTGC
Found at i:136005 original size:7 final size:7
Alignment explanation
Indices: 135989--136022 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
135979 CATATTTTCC
135989 TTTTTAT
1 TTTTTAT
*
135996 TTTATTTT
1 TTT-TTAT
136004 TTTTTAT
1 TTTTTAT
136011 TTTTTAT
1 TTTTTAT
136018 TTTTT
1 TTTTT
136023 TATGGCCGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:136009 original size:15 final size:15
Alignment explanation
Indices: 135989--136025 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
135979 CATATTTTCC
135989 TTTTTATTTTATT-TT
1 TTTTTATTTT-TTATT
136004 TTTTTATTTTTTATT
1 TTTTTATTTTTTATT
136019 TTTTTAT
1 TTTTTAT
136026 GGCCGATATC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 2 0.10
15 19 0.90
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (15 bp):
TTTTTATTTTTTATT
Found at i:138065 original size:17 final size:18
Alignment explanation
Indices: 138032--138065 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
138022 GGGATTGAGT
138032 AATTTCATTTCTAAGTAA
1 AATTTCATTTCTAAGTAA
*
138050 AATTTTATTT-TAAGTA
1 AATTTCATTTCTAAGTA
138066 TTAGCAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
AATTTCATTTCTAAGTAA
Found at i:149337 original size:23 final size:23
Alignment explanation
Indices: 149306--149349 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
149296 CTTTTTTTTT
149306 AAAGAAATTAAGAGACATATTTC
1 AAAGAAATTAAGAGACATATTTC
*
149329 AAAGGAATTAAGAGACATATT
1 AAAGAAATTAAGAGACATATT
149350 AATTACATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.52, C:0.07, G:0.16, T:0.25
Consensus pattern (23 bp):
AAAGAAATTAAGAGACATATTTC
Found at i:151384 original size:17 final size:16
Alignment explanation
Indices: 151330--151380 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 16
151320 GATTACCCAC
*
151330 AGATCACTAGTGATCTA
1 AGATCACCAGTGATC-A
151347 AGATCACCAGTGATGCA
1 AGATCACCAGTGAT-CA
*
151364 AGATCACCGGTGATCA
1 AGATCACCAGTGATCA
151380 A
1 A
151381 AGATTACATG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
16 3 0.10
17 27 0.87
18 1 0.03
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (16 bp):
AGATCACCAGTGATCA
Found at i:151825 original size:35 final size:35
Alignment explanation
Indices: 151758--151839 Score: 89
Period size: 35 Copynumber: 2.4 Consensus size: 35
151748 AATAAAATTT
* * *
151758 GAAATAGAATAGAATCTTGTATATATATAAAAAAA
1 GAAATAGAATAGAATCCTGTATATAAAAAAAAAAA
*
151793 GAAATATAATAGAATCACTGT-TATAAAAAAAAAAA
1 GAAATAGAATAGAATC-CTGTATATAAAAAAAAAAA
*
151828 -AGA-AGAATAGAA
1 GAAATAGAATAGAA
151840 CCACCAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
33 8 0.20
34 2 0.05
35 27 0.68
36 3 0.08
ACGTcount: A:0.61, C:0.04, G:0.12, T:0.23
Consensus pattern (35 bp):
GAAATAGAATAGAATCCTGTATATAAAAAAAAAAA
Found at i:152126 original size:13 final size:13
Alignment explanation
Indices: 152106--152145 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
152096 AAATTACTAC
152106 TATATATATATAT
1 TATATATATATAT
* *
152119 TGTATATATTTAT
1 TATATATATATAT
152132 TATATATATTATAT
1 TATATATA-TATAT
152146 ACCTACTATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 18 0.82
14 4 0.18
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (13 bp):
TATATATATATAT
Found at i:159378 original size:30 final size:32
Alignment explanation
Indices: 159342--159407 Score: 93
Period size: 32 Copynumber: 2.1 Consensus size: 32
159332 AGAAAATTTA
*
159342 AAAAATTCTTAAAAGAAT-A-AAA-AAAAAGGG
1 AAAAATTC-AAAAAGAATGACAAAGAAAAAGGG
159372 AAAAATTCAAAAAGAATGACAAAGAAAAAGGG
1 AAAAATTCAAAAAGAATGACAAAGAAAAAGGG
159404 AAAA
1 AAAA
159408 GATAGTAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 8 0.25
30 9 0.28
31 3 0.09
32 12 0.38
ACGTcount: A:0.68, C:0.05, G:0.15, T:0.12
Consensus pattern (32 bp):
AAAAATTCAAAAAGAATGACAAAGAAAAAGGG
Found at i:159655 original size:17 final size:18
Alignment explanation
Indices: 159619--159658 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
159609 TTTCTTCCTG
* *
159619 TCTCTGTCTTTGTTTCTC
1 TCTCTGTCTCTGTCTCTC
159637 TCTCT-TCTCTGTCTCTC
1 TCTCTGTCTCTGTCTCTC
159654 TCTCT
1 TCTCT
159659 CCAGCACACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.00, C:0.35, G:0.07, T:0.57
Consensus pattern (18 bp):
TCTCTGTCTCTGTCTCTC
Found at i:161270 original size:2 final size:2
Alignment explanation
Indices: 161263--161306 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
161253 TGGAAGCAAT
161263 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
161305 TC
1 TC
161307 GCTATTGCAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:163780 original size:36 final size:38
Alignment explanation
Indices: 163698--163783 Score: 104
Period size: 39 Copynumber: 2.3 Consensus size: 38
163688 TTCTTAGGAT
* * *
163698 TCACAAGGTTAAGTTCTACTTTTTGAAAAAAATCAGGAT
1 TCACAAGGTTAAGTTCTAC-TTTTAAAAAAAATCAGAAA
*
163737 TCACAAGGTTAAGTTCTAC-TTTAAAAAAAATTA-AAA
1 TCACAAGGTTAAGTTCTACTTTTAAAAAAAATCAGAAA
*
163773 TCTCAAGGTTA
1 TCACAAGGTTA
163784 GTCTAAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
36 11 0.26
37 12 0.29
39 19 0.45
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.33
Consensus pattern (38 bp):
TCACAAGGTTAAGTTCTACTTTTAAAAAAAATCAGAAA
Found at i:164821 original size:17 final size:18
Alignment explanation
Indices: 164799--164832 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
164789 TTTTGAGGAA
*
164799 GAAAAG-AAAGATGGTTT
1 GAAAAGCAAAGAGGGTTT
164816 GAAAAGCAAAGAGGGTT
1 GAAAAGCAAAGAGGGTT
164833 CCTTTGGAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.47, C:0.03, G:0.32, T:0.18
Consensus pattern (18 bp):
GAAAAGCAAAGAGGGTTT
Found at i:164904 original size:159 final size:159
Alignment explanation
Indices: 164615--164930 Score: 481
Period size: 159 Copynumber: 2.0 Consensus size: 159
164605 CCGACAACGC
* *
164615 CTCTCTTTCTGGTTCTTTTGAGGAACAAAAGAAAGGTGATGTGAGAAACAAAGAGGGTTCCTTTG
1 CTCTCTTTCTGGGTCTTTTGAGGAACAAAAGAAAGATGATGTGAGAAACAAAGAGGGTTCCTTTG
** * * *
164680 GAGTTCAAGATTTTGATAATCTTGTCAACAATGCCATGGAAGTTGATATGGATTCTGTAATTGAA
66 GAGTTCAAGAAGTTGATAACCTTGTCAACAATGCAATGGAAGTTGATATGGAGTCTGTAATTGAA
* * *
164745 GCTGATAAGAAGGAACATCCAGGGACTTG
131 GCCGATAAAAAGGAACACCCAGGGACTTG
* * *
164774 CTCTCTTTCTGGGTCTTTTGAGGAAGAAAAGAAAGATGGTTTGA-AAAGCAAAGAGGGTTCCTTT
1 CTCTCTTTCTGGGTCTTTTGAGGAACAAAAGAAAGATGATGTGAGAAA-CAAAGAGGGTTCCTTT
* *
164838 GGAGTTCAAGAAGTTGATAACCTTGTCAACAATGCAATTGAAGTTGATATGGAGTCTGTCATTGA
65 GGAGTTCAAGAAGTTGATAACCTTGTCAACAATGCAATGGAAGTTGATATGGAGTCTGTAATTGA
164903 AGCCGATAAAAAGGAACACCCAGGGACT
130 AGCCGATAAAAAGGAACACCCAGGGACT
164931 AGCTTGGAAT
Statistics
Matches: 141, Mismatches: 15, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
158 3 0.02
159 138 0.98
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.28
Consensus pattern (159 bp):
CTCTCTTTCTGGGTCTTTTGAGGAACAAAAGAAAGATGATGTGAGAAACAAAGAGGGTTCCTTTG
GAGTTCAAGAAGTTGATAACCTTGTCAACAATGCAATGGAAGTTGATATGGAGTCTGTAATTGAA
GCCGATAAAAAGGAACACCCAGGGACTTG
Found at i:174426 original size:29 final size:30
Alignment explanation
Indices: 174370--174427 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
174360 TCTAATTAAT
*
174370 GTATAAATATAAATTATTCAATTTTATTAC
1 GTATAAATATAAATTATTCAATTATATTAC
*
174400 GTATAAATAT-AATTATTTAATTATATTA
1 GTATAAATATAAATTATTCAATTATATTA
174428 TATTATTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (30 bp):
GTATAAATATAAATTATTCAATTATATTAC
Found at i:179167 original size:27 final size:25
Alignment explanation
Indices: 179100--179168 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 25
179090 AAATTTCACT
*
179100 AGGGGCAGTTTGGTCATTTTCACCTC
1 AGGGGCA-TTTGGTCATTTTCACCCC
* *
179126 GGGGGCATTTTGGTCATTTTCCGCCCC
1 AGGGGCA-TTTGGTCATTTT-CACCCC
179153 AGGGGCATTTCGGTCA
1 AGGGGCATTT-GGTCA
179169 AAATTACTGT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.58
27 15 0.42
ACGTcount: A:0.13, C:0.25, G:0.30, T:0.32
Consensus pattern (25 bp):
AGGGGCATTTGGTCATTTTCACCCC
Found at i:183138 original size:48 final size:47
Alignment explanation
Indices: 182953--183867 Score: 1372
Period size: 48 Copynumber: 19.4 Consensus size: 47
182943 GAAGATAGTT
*
182953 TTAAACTAAGTAGTAAAAG-AGAAGAGATTAGTTTAATTCTAGGTAA
1 TTAAACTAAGTAGTAAAAGAAGAAGAAATTAGTTTAATTCTAGGTAA
* *
182999 CTAAACTAAGTAGTAAAAG-AGAAGAGATTAGTTTAATTCTAGGTAA
1 TTAAACTAAGTAGTAAAAGAAGAAGAAATTAGTTTAATTCTAGGTAA
*
183045 TTAAACTAAGTAGTAAAAG-AGAAGAGATTAGTTTAATTCTAGGTAA
1 TTAAACTAAGTAGTAAAAGAAGAAGAAATTAGTTTAATTCTAGGTAA
* *
183091 TTGAACTAAATAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAA
1 TTAAACTAAGTAGTAAAAGAAGAAGAAA-TTAGTTTAATTCTAGGTAA
*
183139 TTGAACTAAGTAGTAAAAGAAGAAGAAATTAAGTTTAATTCTAGGTAA
1 TTAAACTAAGTAGTAAAAGAAGAAGAAATT-AGTTTAATTCTAGGTAA
*
183187 TTAAACTAAATAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAA
1 TTAAACTAAGTAGTAAAAGAAGAAGAAA-TTAGTTTAATTCTAGGTAA
* * *
183235 TTAAACTAAATAGTAAAAGAAGAAGAAAGTAGTTTAATTCCAGGTAA
1 TTAAACTAAGTAGTAAAAGAAGAAGAAATTAGTTTAATTCTAGGTAA
* *
183282 TTAAACTAAGTAATAAAAG-AGAAGAGATTAGTTTAATTCTAGGTAA
1 TTAAACTAAGTAGTAAAAGAAGAAGAAATTAGTTTAATTCTAGGTAA
*
183328 TTGAACTAAGTAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAA
1 TTAAACTAAGTAGTAAAAGAAGAAGAAA-TTAGTTTAATTCTAGGTAA
*
183376 TTAAACTAAATAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAA
1 TTAAACTAAGTAGTAAAAGAAGAAGAAA-TTAGTTTAATTCTAGGTAA
* * *
183424 TTAAACTAAATAGTAAAAGAAGAAGAAAGTAGTTTAATTCCAGGTAA
1 TTAAACTAAGTAGTAAAAGAAGAAGAAATTAGTTTAATTCTAGGTAA
* *
183471 TTAAACTAAGTAATAAAAG-AGAAGAGATTAGTTTAATTCTAGGTAA
1 TTAAACTAAGTAGTAAAAGAAGAAGAAATTAGTTTAATTCTAGGTAA
* *
183517 TTGAACTAAATAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAA
1 TTAAACTAAGTAGTAAAAGAAGAAGAAA-TTAGTTTAATTCTAGGTAA
*
183565 TTGAACTAAGTAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAA
1 TTAAACTAAGTAGTAAAAGAAGAAGAAA-TTAGTTTAATTCTAGGTAA
*
183613 TTAAACTAAATAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAA
1 TTAAACTAAGTAGTAAAAGAAGAAGAAA-TTAGTTTAATTCTAGGTAA
* * *
183661 TTAAACTAAATAGTAAAAGAAGAAGAAAGTAGATTTTAATTCCAGGTAA
1 TTAAACTAAGTAGTAAAAGAAGAAGAAATTAG--TTTAATTCTAGGTAA
* * * *
183710 TTAAACTAAGTAATAAAAGAGGAGGAGATTAGTTTAATTCTAGGTAA
1 TTAAACTAAGTAGTAAAAGAAGAAGAAATTAGTTTAATTCTAGGTAA
*
183757 TTAAACTAAATAGTAAAAGAAGAAGAAATTAGTTTAATTCTAGGTAA
1 TTAAACTAAGTAGTAAAAGAAGAAGAAATTAGTTTAATTCTAGGTAA
* * * *
183804 TTGAACTAAGTAATAAAAGAAGAAAAAATTAATTTAATTCTAGGTAA
1 TTAAACTAAGTAGTAAAAGAAGAAGAAATTAGTTTAATTCTAGGTAA
*
183851 TTAAACTAAGTAATAAA
1 TTAAACTAAGTAGTAAA
183868 GAGGAGTCAA
Statistics
Matches: 805, Mismatches: 54, Indels: 19
0.92 0.06 0.02
Matches are distributed among these distances:
46 188 0.23
47 208 0.26
48 367 0.46
49 42 0.05
ACGTcount: A:0.49, C:0.05, G:0.17, T:0.30
Consensus pattern (47 bp):
TTAAACTAAGTAGTAAAAGAAGAAGAAATTAGTTTAATTCTAGGTAA
Found at i:183346 original size:189 final size:189
Alignment explanation
Indices: 182956--183867 Score: 1424
Period size: 189 Copynumber: 4.8 Consensus size: 189
182946 GATAGTTTTA
* * *
182956 AACTAAGTAGTAAAAG-AGAAGAGATTAGTTTAATTCTAGGTAACTAAACTAAGTAGTAAAAG-A
1 AACTAAGTAGTAAAAGAAGAAGAAATTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGAA
* * *
183019 GAAGAGA-TTAGTTTAATTCTAGGTAATTAAACTAAGTAGTAAAAG-AGAAGAGATTAGTTTAAT
66 GAAGAAATTTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGAAGAAGAAATTAGTTTAAT
* * *
183082 TCTAGGTAATTGAACTAAATAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAATTG
131 TCTAGGTAATTAAACTAAGTAATAAAAGAAGAAGAAA-TTAGTTTAATTCTAGGTAATTG
183142 AACTAAGTAGTAAAAGAAGAAGAAATTAAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGA
1 AACTAAGTAGTAAAAGAAGAAGAAATT-AGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGA
*
183207 AGAAGAAATTTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGAAGAAGAAAGTAGTTTAA
65 AGAAGAAATTTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGAAGAAGAAATTAGTTTAA
* *
183272 TTCCAGGTAATTAAACTAAGTAATAAAAG-AGAAGAGATTAGTTTAATTCTAGGTAATTG
130 TTCTAGGTAATTAAACTAAGTAATAAAAGAAGAAGAAATTAGTTTAATTCTAGGTAATTG
183331 AACTAAGTAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGA
1 AACTAAGTAGTAAAAGAAGAAGAAA-TTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGA
*
183396 AGAAGAAATTTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGAAGAAGAAAGTAGTTTAA
65 AGAAGAAATTTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGAAGAAGAAATTAGTTTAA
* *
183461 TTCCAGGTAATTAAACTAAGTAATAAAAG-AGAAGAGATTAGTTTAATTCTAGGTAATTG
130 TTCTAGGTAATTAAACTAAGTAATAAAAGAAGAAGAAATTAGTTTAATTCTAGGTAATTG
* * *
183520 AACTAAATAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAATTGAACTAAGTAGTAAAAGA
1 AACTAAGTAGTAAAAGAAGAAGAAA-TTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGA
183585 AGAAGAAATTTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGAAGAAGAAATTTAGTTTA
65 AGAAGAAATTTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGAAGAAGAAA-TTAGTTTA
* * * * *
183650 ATTCTAGGTAATTAAACTAAATAGTAAAAGAAGAAGAAAGTAGATTTTAATTCCAGGTAATTA
129 ATTCTAGGTAATTAAACTAAGTAATAAAAGAAGAAGAAATTAG--TTTAATTCTAGGTAATTG
* * * *
183713 AACTAAGTAATAAAAGAGGAGGAGATTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGAA
1 AACTAAGTAGTAAAAGAAGAAGAAATTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGAA
* * * * *
183778 GAAGAAA-TTAGTTTAATTCTAGGTAATTGAACTAAGTAATAAAAGAAGAAAAAATTAATTTAAT
66 GAAGAAATTTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGAAGAAGAAATTAGTTTAAT
183842 TCTAGGTAATTAAACTAAGTAATAAA
131 TCTAGGTAATTAAACTAAGTAATAAA
183868 GAGGAGTCAA
Statistics
Matches: 679, Mismatches: 37, Indels: 16
0.93 0.05 0.02
Matches are distributed among these distances:
186 16 0.02
187 9 0.01
188 34 0.05
189 333 0.49
190 113 0.17
191 93 0.14
192 45 0.07
193 36 0.05
ACGTcount: A:0.49, C:0.05, G:0.17, T:0.30
Consensus pattern (189 bp):
AACTAAGTAGTAAAAGAAGAAGAAATTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGAA
GAAGAAATTTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGAAGAAGAAATTAGTTTAAT
TCTAGGTAATTAAACTAAGTAATAAAAGAAGAAGAAATTAGTTTAATTCTAGGTAATTG
Found at i:183365 original size:237 final size:236
Alignment explanation
Indices: 182953--183859 Score: 1489
Period size: 237 Copynumber: 3.8 Consensus size: 236
182943 GAAGATAGTT
* * * * * *
182953 TTAAACTAAGTAGTAAAAG-AGAAGAGATTAGTTTAATTCTAGGTAACTAAACTAAGTAGTAAAA
1 TTAAACTAAATAGTAAAAGAAGAAGAAAGTAGTTTAATTCCAGGTAATTAAACTAAGTAATAAAA
* *
183017 GAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTAAAAG-AGAAGAGATTAGTTTAA
66 GAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGAAGAAGAAATTAGTTTAA
* *
183081 TTCTAGGTAATTGAACTAAATAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAATTGAACT
131 TTCTAGGTAATTGAACTAAGTAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAATTAAACT
* *
183146 AAGTAGTAAAAGAAGAAGAAATTAAGTTTAATTCTAGGTAA
196 AAATAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAA
* * * *
183187 TTAAACTAAATAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAA
1 TTAAACTAAATAGTAAAAGAAGAAGAAA-GTAGTTTAATTCCAGGTAATTAAACTAAGTAATAAA
* * * * * *
183252 AGAAGAAGAAAGTAGTTTAATTCCAGGTAATTAAACTAAGTAATAAAAG-AGAAGAGATTAGTTT
65 AG-AGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGAAGAAGAAATTAGTTT
183316 AATTCTAGGTAATTGAACTAAGTAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAATTAAA
129 AATTCTAGGTAATTGAACTAAGTAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAATTAAA
183381 CTAAATAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAA
194 CTAAATAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAA
183424 TTAAACTAAATAGTAAAAGAAGAAGAAAGTAGTTTAATTCCAGGTAATTAAACTAAGTAATAAAA
1 TTAAACTAAATAGTAAAAGAAGAAGAAAGTAGTTTAATTCCAGGTAATTAAACTAAGTAATAAAA
*
183489 GAGAAGAGATTAGTTTAATTCTAGGTAATTGAACTAAATAGTAAAAGAAGAAGAAATTTAGTTTA
66 GAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGAAGAAGAAA-TTAGTTTA
183554 ATTCTAGGTAATTGAACTAAGTAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAATTAAAC
130 ATTCTAGGTAATTGAACTAAGTAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAATTAAAC
183619 TAAATAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAA
195 TAAATAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAA
183661 TTAAACTAAATAGTAAAAGAAGAAGAAAGTAGATTTTAATTCCAGGTAATTAAACTAAGTAATAA
1 TTAAACTAAATAGTAAAAGAAGAAGAAAGTAG--TTTAATTCCAGGTAATTAAACTAAGTAATAA
*
183726 AAGAGGAGGAGATTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGAAGAAGAAATTAGTT
64 AAGA-GAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGAAGAAGAAATTAGTT
* * *
183791 TAATTCTAGGTAATTGAACTAAGTAATAAAAGAAGAA-AAAATTAATTTAATTCTAGGTAATTAA
128 TAATTCTAGGTAATTGAACTAAGTAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAATTAA
183855 ACTAA
193 ACTAA
183860 GTAATAAAGA
Statistics
Matches: 637, Mismatches: 28, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
234 18 0.03
235 47 0.07
236 77 0.12
237 336 0.53
238 30 0.05
239 77 0.12
240 52 0.08
ACGTcount: A:0.49, C:0.05, G:0.17, T:0.30
Consensus pattern (236 bp):
TTAAACTAAATAGTAAAAGAAGAAGAAAGTAGTTTAATTCCAGGTAATTAAACTAAGTAATAAAA
GAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAATAGTAAAAGAAGAAGAAATTAGTTTAA
TTCTAGGTAATTGAACTAAGTAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAATTAAACT
AAATAGTAAAAGAAGAAGAAATTTAGTTTAATTCTAGGTAA
Done.