Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018524.1 Corchorus olitorius cultivar O-4 contig18557, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3404
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35


Found at i:476 original size:16 final size:16

Alignment explanation


    Indices: 455--485  Score: 62
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        445 TTTCTTTGCA

                            
        455 TGCTTTGATTGATTGT
          1 TGCTTTGATTGATTGT

                           
        471 TGCTTTGATTGATTG
          1 TGCTTTGATTGATTG

        486 CCTATTTCTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.13, C:0.06, G:0.26, T:0.55


Consensus pattern (16 bp):   
TGCTTTGATTGATTGT
Done.