Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018529.1 Corchorus olitorius cultivar O-4 contig18562, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12174
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29


Found at i:6336 original size:32 final size:32

Alignment explanation


    Indices: 6298--6369  Score: 126
    Period size: 32  Copynumber: 2.2  Consensus size: 32

       6288 CCGGTCCTAT

                                   **       
       6298 CCGGGCATGAGGCGCGGCTGGCCGGGCCACAG
          1 CCGGGCATGAGGCGCGGCTGGCCAAGCCACAG

                                            
       6330 CCGGGCATGAGGCGCGGCTGGCCAAGCCACAG
          1 CCGGGCATGAGGCGCGGCTGGCCAAGCCACAG

                    
       6362 CCGGGCAT
          1 CCGGGCAT

       6370 TTGCCGGTTG


Statistics
Matches: 38,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  32   38  1.00

ACGTcount: A:0.15, C:0.35, G:0.43, T:0.07


Consensus pattern (32 bp):   
CCGGGCATGAGGCGCGGCTGGCCAAGCCACAG

Found at i:11413 original size:15 final size:15

Alignment explanation


    Indices: 11393--11422  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

      11383 GGGGATAATT

                           
      11393 AATCCAAAAACAATC
          1 AATCCAAAAACAATC

                           
      11408 AATCCAAAAACAATC
          1 AATCCAAAAACAATC

      11423 CAACAACAAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13


Consensus pattern (15 bp):   
AATCCAAAAACAATC
Done.