Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018530.1 Corchorus olitorius cultivar O-4 contig18563, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16264

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1532--1573
22
1.9
23
85
9
61
33
16
9
40
1.81
1617--1711
37
2.5
37
78
13
102
52
11
8
27
1.66
1764--1832
31
2.2
31
94
0
120
34
27
20
17
1.95
5261--5293
2
16.5
2
100
0
66
48
0
0
51
1.00
9765--9877
38
2.9
38
85
3
129
28
18
16
36
1.93
9886--10021
39
3.5
39
84
3
168
24
20
19
36
1.95
10080--10206
39
3.3
38
75
13
134
21
21
19
37
1.94
11854--11905
11
4.8
11
75
13
54
76
17
5
0
0.97
11859--11907
16
3.1
17
77
22
61
75
16
8
0
1.03
16117--16247
68
1.9
68
89
3
201
48
14
12
24
1.79

Tables:   1

The End!