Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018532.1 Corchorus olitorius cultivar O-4 contig18565, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104147

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3097--3307
103
2.0
104
96
0
388
46
12
6
34
1.68
6135--6192
26
2.2
26
82
17
75
51
1
3
43
1.28
19861--19891
12
2.6
12
94
0
53
0
6
41
51
1.27
20742--20782
4
10.2
4
94
0
73
24
0
21
53
1.46
23076--23126
27
2.0
24
85
14
68
47
7
19
25
1.76
51795--51835
20
2.0
20
85
0
55
7
9
12
70
1.33
52874--52919
22
2.1
22
84
8
58
73
8
6
10
1.23
53100--53138
20
1.9
21
84
5
53
51
2
10
35
1.50
53539--53592
20
2.6
21
80
11
58
48
3
12
35
1.60
54923--54961
4
9.8
4
100
0
78
74
0
0
25
0.82
66690--66749
30
2.0
30
100
0
120
36
16
20
26
1.93
76794--76822
5
6.0
5
92
8
51
58
20
0
20
1.39
81361--81395
17
2.1
17
100
0
70
17
11
17
54
1.71
81901--81926
6
4.3
6
100
0
52
15
34
30
19
1.93
86527--86764
78
3.0
79
89
2
370
31
29
6
32
1.82
97451--97486
12
3.0
12
91
0
54
0
13
0
86
0.58
97795--97841
11
4.3
11
83
0
58
55
0
2
42
1.12
99113--99303
31
6.2
31
100
0
382
51
0
3
45
1.17
99130--99307
11
17.0
11
66
11
97
53
0
2
43
1.15

Tables:   1

The End!