Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018533.1 Corchorus olitorius cultivar O-4 contig18566, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6316
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29


Found at i:626 original size:22 final size:22

Alignment explanation


    Indices: 576--628  Score: 56
    Period size: 22  Copynumber: 2.4  Consensus size: 22

        566 TGCTTTCTGA

                              *   
        576 TTAATTGTTTTCTTTAATTTTC
          1 TTAATTGTTTTCTTTAATATTC

              *                     
        598 TTGATTGTTTTC-TTAGATAATT-
          1 TTAATTGTTTTCTTTA-AT-ATTC

                     
        620 TTAATTGTT
          1 TTAATTGTT

        629 AGATTGGTTT


Statistics
Matches: 26,  Mismatches: 3, Indels: 4
        0.79            0.09        0.12

Matches are distributed among these distances:
  21    3  0.12
  22   21  0.81
  23    2  0.08

ACGTcount: A:0.21, C:0.06, G:0.09, T:0.64


Consensus pattern (22 bp):   
TTAATTGTTTTCTTTAATATTC
Done.