Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018534.1 Corchorus olitorius cultivar O-4 contig18567, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28284

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1310--1345
19
1.9
18
88
5
54
38
8
22
30
1.83
11923--11956
15
2.2
16
89
5
52
44
0
0
55
0.99
12064--12254
44
4.4
44
76
7
167
42
9
13
34
1.78
11986--12256
22
12.4
22
72
10
137
42
9
14
33
1.79
12003--12812
66
12.3
66
67
14
227
38
9
16
35
1.82
12338--12816
44
11.0
44
71
8
295
37
9
16
36
1.81
12338--12816
22
22.0
22
72
9
268
37
9
16
36
1.81
12789--12829
22
1.9
22
85
5
57
56
4
12
26
1.56
17290--17551
107
2.5
104
92
2
418
40
7
9
43
1.64
24690--24736
20
2.4
19
82
10
58
4
40
38
17
1.69
26169--26195
14
1.9
14
100
0
54
37
0
7
55
1.28
26190--26243
3
18.3
3
96
3
101
35
0
0
64
0.94
26257--26335
30
2.6
31
80
11
92
27
15
11
45
1.80

Tables:   1

The End!