Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018539.1 Corchorus olitorius cultivar O-4 contig18572, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48441

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
157--255
47
2.2
46
85
8
132
21
18
6
54
1.64
231--360
22
6.1
22
81
7
160
13
22
6
56
1.61
230--355
41
3.0
41
81
2
153
13
22
7
57
1.61
233--360
43
3.0
42
80
6
152
14
21
7
57
1.61
371--1401
47
22.1
47
80
7
707
25
19
6
47
1.74
351--1817
94
15.3
94
76
11
878
25
19
6
47
1.74
1376--1606
60
3.8
60
88
6
337
24
19
5
50
1.69
1329--1755
120
4.0
108
75
17
417
26
19
5
48
1.70
1556--1817
47
5.6
47
85
7
336
27
19
5
47
1.71
1556--1817
93
2.8
93
86
4
339
27
19
5
47
1.71
1556--1817
140
1.9
138
86
4
357
27
19
5
47
1.71
2953--2999
22
2.1
22
92
0
76
38
46
4
10
1.58
8304--8360
25
2.2
26
84
6
80
28
19
28
24
1.98
10856--11474
308
2.0
307
97
0
1168
37
18
12
30
1.88
18922--18952
14
2.1
15
94
5
55
58
6
29
6
1.48
20884--20931
11
4.7
11
78
21
52
39
6
20
33
1.78
24081--24145
26
2.4
27
92
5
114
16
21
1
60
1.45
24157--24242
35
2.4
36
86
5
115
22
17
3
56
1.55
24230--24268
9
4.3
9
81
12
53
15
17
0
66
1.25
24306--24618
35
8.5
36
69
19
141
21
20
4
53
1.63
24410--24579
7
24.3
7
66
23
56
20
21
4
54
1.63
24297--24579
63
4.4
63
76
15
233
21
19
4
54
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24341--24498
69
2.3
71
82
14
206
21
19
3
55
1.59
24543--24615
15
5.1
14
69
22
53
21
20
4
53
1.62
24278--24611
21
15.6
21
70
17
174
22
20
4
52
1.64
24278--24618
42
7.9
43
76
15
239
22
20
4
52
1.64
24579--24705
59
2.2
56
80
14
143
25
18
5
50
1.68
26213--26251
6
6.3
6
83
16
53
0
17
0
82
0.68
26192--26254
27
2.5
25
82
7
65
3
20
0
76
0.93
26213--26252
14
3.2
13
89
10
57
0
17
0
82
0.67
26887--26933
13
3.8
12
81
16
51
46
10
8
34
1.69
30856--30892
5
7.4
5
87
0
56
75
21
2
0
0.92
33299--33345
24
2.0
23
91
4
76
4
48
6
40
1.48
36165--36291
39
3.2
39
72
16
118
43
18
11
26
1.84
36136--36291
79
2.0
80
85
5
217
42
19
10
26
1.85
36268--36375
34
3.2
34
98
0
207
48
10
12
29
1.73
36388--36413
7
3.7
7
100
0
52
11
0
11
76
1.01
36653--36699
19
2.5
19
75
3
51
48
0
2
48
1.13
47642--47682
21
1.9
21
85
5
55
58
9
4
26
1.50
47719--47796
34
2.3
35
81
4
95
24
12
19
43
1.86
47738--47815
34
2.3
34
90
0
120
26
17
21
33
1.96

Tables:   1

The End!