Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018540.1 Corchorus olitorius cultivar O-4 contig18573, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24423

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6818--6885
26
2.5
27
92
4
111
25
13
14
47
1.80
10021--10343
162
2.0
162
96
0
601
29
14
18
37
1.90
11716--12167
226
2.0
228
85
7
625
26
15
22
35
1.94
12120--12153
17
2.0
17
100
0
68
35
17
17
29
1.93
12281--12330
25
2.0
25
96
0
91
50
0
14
36
1.43
14179--14223
19
2.4
18
85
3
63
48
6
0
44
1.29
14484--14525
22
1.9
22
85
0
57
40
26
21
11
1.88
15393--15463
21
3.3
21
69
11
72
36
8
4
50
1.52
15395--15477
43
1.9
43
97
0
157
34
6
3
55
1.42
15395--15462
22
3.1
22
66
17
61
35
7
4
52
1.49
15659--15865
105
2.0
102
91
2
333
49
1
13
35
1.52
17352--17378
2
13.5
2
100
0
54
48
0
0
51
1.00

Tables:   1

The End!