Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018542.1 Corchorus olitorius cultivar O-4 contig18575, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55546

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
305--365
24
2.5
24
100
0
122
31
8
11
49
1.68
1717--2021
41
7.2
41
73
11
240
35
17
19
27
1.94
1758--2164
173
2.4
173
89
1
645
35
16
19
28
1.94
20446--20526
39
2.0
40
92
2
137
50
8
3
37
1.51
20517--20563
25
1.9
24
91
4
76
31
6
6
55
1.51
20661--21232
205
2.8
204
96
1
1046
35
11
8
44
1.72
25522--25557
19
1.9
18
88
5
54
41
8
22
27
1.82
25510--25569
30
2.0
30
83
6
77
41
8
18
31
1.80
29240--29420
23
7.9
23
88
2
247
50
24
5
19
1.69
33635--33674
21
1.9
21
94
0
71
17
22
35
25
1.95
36462--36486
12
2.1
12
100
0
50
24
16
16
44
1.86
38247--38286
21
1.9
21
84
0
53
30
17
17
35
1.93
47501--47628
58
2.2
58
83
5
152
15
17
28
38
1.90
47471--47628
29
5.5
28
77
8
122
18
17
26
37
1.93

Tables:   1

The End!